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Showing 1–6 of 6 results

Advanced filters: Author: Christian Dallago Clear advanced filters

GPU-accelerated homology search with MMseqs2

Graphics processing unit-accelerated MMseqs2 offers tremendous speedups for homology retrieval from metagenomic databases, query-centered multiple sequence alignment generation for structure prediction, and structural searches with Foldseek.

Felix Kallenborn
Alejandro Chacon
Martin Steinegger
ResearchOpen Access18 Sept 2025
Nature Methods

Volume: 22, P: 2024-2027
Nucleotide Transformer: building and evaluating robust foundation models for human genomics

Nucleotide Transformer is a series of genomics foundation models of different parameter sizes and training datasets that can be applied to various downstream tasks by fine-tuning.

Hugo Dalla-Torre
Liam Gonzalez
Thomas Pierrot
ResearchOpen Access28 Nov 2024
Nature Methods

Volume: 22, P: 287-297
Illuminating enzyme design using deep learning

From humans designing machines, to machines designing biology, deep learning is turning the tables for assisted exploration of biologically active and diverse protein designs. Now, a deep-learning-based strategy has been used to design artificial enzymes that catalyse a light-emitting reaction.

Christian Dallago
Kevin K. Yang
News & Views29 May 2023
Nature Chemistry

Volume: 15, P: 749-750
Embeddings from deep learning transfer GO annotations beyond homology

Maria Littmann
Michael Heinzinger
Burkhard Rost
ResearchOpen Access13 Jan 2021
Scientific Reports

Volume: 11, P: 1-14
Protein embeddings and deep learning predict binding residues for various ligand classes

Maria Littmann
Michael Heinzinger
Burkhard Rost
ResearchOpen Access13 Dec 2021
Scientific Reports

Volume: 11, P: 1-15
30-day morbidity and mortality of sleeve gastrectomy, Roux-en-Y gastric bypass and one anastomosis gastric bypass: a propensity score-matched analysis of the GENEVA data

Rishi Singhal
Victor Roth Cardoso
Mehmet Saydam
ResearchOpen Access15 Dec 2021
International Journal of Obesity

Volume: 46, P: 750-757