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Showing 1–22 of 22 results

Advanced filters: Author: Daehwan Kim Clear advanced filters

Development and evaluation of a hybrid capture-based NGS panel for comprehensive detection of respiratory pathogens

Jeong-Ah Kim
Jeong-Min Kim
Eun-Jin Kim
ResearchOpen Access26 Nov 2025
Scientific Reports

Volume: 15, P: 1-10
Development of a machine learning model to diagnose pediatric lower respiratory tract infections

Ah Ra Lee
Hyunju Lee
Eu Suk Kim
ResearchOpen Access24 Nov 2025
Scientific Reports

Volume: 15, P: 1-12
Health risk assessment and source tracking of heavy metal exposure from indoor settled dust in an environmentally vulnerable area of the Republic of Korea

Gihong Min
Daehwan Kim
Wonho Yang
ResearchOpen Access12 Nov 2025
Scientific Reports

Volume: 15, P: 1-16
Correction: Corrigendum: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell
Adam Roberts
Lior Pachter
Amendments and Corrections25 Sept 2014
Nature Protocols

Volume: 9, P: 2513
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

A graph-based genome indexing scheme enables variant-aware alignment of sequences with very low memory requirements.

Daehwan Kim
Joseph M. Paggi
Steven L. Salzberg
Research02 Aug 2019
Nature Biotechnology

Volume: 37, P: 907-915
Development and validation of a transformer model-based early warning score for real-time prediction of adverse outcomes in the emergency department

Hansol Chang
Jong Eun Park
Tae Gun Shin
ResearchOpen Access02 Jul 2025
Scientific Reports

Volume: 15, P: 1-11
Cyclin E1/CDK2 activation defines a key vulnerability to WEE1 kinase inhibition in gynecological cancers

Daehwan Kim
Heekyung Chung
Mark R. Lackner
ResearchOpen Access04 Jan 2025
npj Precision Oncology

Volume: 9, P: 1-16
Discrimination of single-point mutations in unamplified genomic DNA via Cas9 immobilized on a graphene field-effect transistor

Liquid-gated graphene field-effect transistors anchoring guide RNA–Cas9 complexes can be used to discriminate between single-point mutations in human genomic samples.

Sarah Balderston
Jeffrey J. Taulbee
Kiana Aran
Research05 Apr 2021
Nature Biomedical Engineering

Volume: 5, P: 713-725
Proton-enabled activation of peptide materials for biological bimodal memory

The structural programmability and functionality of peptide materials can be leverage for various next-generation devices such as non-volatile memories. The authors report a proton-coupled mechanism in tyrosine-rich peptides for realizing multimodal memory devices.

Min-Kyu Song
Seok Daniel Namgung
Jang-Yeon Kwon
ResearchOpen Access19 Nov 2020
Nature Communications

Volume: 11, P: 1-8
HISAT: a fast spliced aligner with low memory requirements

HISAT (hierarchical indexing for spliced alignment of transcripts) uses global and local indices for fast, sensitive alignment with small memory requirements.

Daehwan Kim
Ben Langmead
Steven L Salzberg
Research09 Mar 2015
Nature Methods

Volume: 12, P: 357-360
DDR2 controls the epithelial-mesenchymal-transition-related gene expression via c-Myb acetylation upon matrix stiffening

Daehwan Kim
Eunae You
Sangmyung Rhee
ResearchOpen Access28 Jul 2017
Scientific Reports

Volume: 7, P: 1-15
Reconsidering repurposing: long-term metformin treatment impairs cognition in Alzheimer’s model mice

So Yeon Cho
Eun Woo Kim
Eosu Kim
ResearchOpen Access18 Jan 2024
Translational Psychiatry

Volume: 14, P: 1-10
Functional and evolutionary analysis of Korean bob-tailed native dog using whole-genome sequencing data

Daehwan Lee
Dajeong Lim
Jaebum Kim
ResearchOpen Access11 Dec 2017
Scientific Reports

Volume: 7, P: 1-8
Biomaterials to model and measure epithelial cancers

This Review discusses how biomaterials can be used to recreate and understand the influence of specific tumour microenvironment properties on cancer progression and highlights materials-based strategies to capture, detect and assess metastatic cancer cells in vitro and in vivo.

Pranjali Beri
Bibiana F. Matte
Adam J. Engler
Reviews06 Sept 2018
Nature Reviews Materials

Volume: 3, P: 418-430
Real-time in vivo two-photon imaging study reveals decreased cerebro-vascular volume and increased blood-brain barrier permeability in chronically stressed mice

Sohee Lee
Bok-Man Kang
Minah Suh
ResearchOpen Access30 Aug 2018
Scientific Reports

Volume: 8, P: 1-14
Integration of multi-omics approaches for functional characterization of muscle related selective sweep genes in Nanchukmacdon

Devender Arora
Krishnamoorthy Srikanth
Woncheoul Park
ResearchOpen Access30 Mar 2021
Scientific Reports

Volume: 11, P: 1-12
Holding of bovine blastocysts at suprazero temperatures using small molecules

Daehwan Kim
Hyeonseok Sul
Sangho Roh
ResearchOpen Access25 Aug 2017
Scientific Reports

Volume: 7, P: 1-9
Extracellular Matrix Rigidity-dependent Sphingosine-1-phosphate Secretion Regulates Metastatic Cancer Cell Invasion and Adhesion

Panseon Ko
Daehwan Kim
Sangmyung Rhee
ResearchOpen Access15 Feb 2016
Scientific Reports

Volume: 6, P: 1-13
K-means quantization for a web-based open-source flow cytometry analysis platform

Nathan Wong
Daehwan Kim
Irina M. Conboy
ResearchOpen Access24 Mar 2021
Scientific Reports

Volume: 11, P: 1-12
A chromosome-level genome assembly of the Korean crossbred pig Nanchukmacdon (Sus scrofa)

Daehong Kwon
Nayoung Park
Jaebum Kim
ResearchOpen Access03 Nov 2023
Scientific Data

Volume: 10, P: 1-11
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell
Adam Roberts
Lior Pachter
Protocols01 Mar 2012
Nature Protocols

Volume: 7, P: 562-578
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Pertea et al. describe a protocol to analyze RNA-seq data using HISAT, StringTie and Ballgown (the ‘new Tuxedo’ package). The protocol can be used for assembly of transcripts, quantification of gene expression levels and differential expression analysis.

Mihaela Pertea
Daehwan Kim
Steven L Salzberg
Protocols11 Aug 2016
Nature Protocols

Volume: 11, P: 1650-1667

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Development and evaluation of a hybrid capture-based NGS panel for comprehensive detection of respiratory pathogens

Development of a machine learning model to diagnose pediatric lower respiratory tract infections

Health risk assessment and source tracking of heavy metal exposure from indoor settled dust in an environmentally vulnerable area of the Republic of Korea

Correction: Corrigendum: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Development and validation of a transformer model-based early warning score for real-time prediction of adverse outcomes in the emergency department

Cyclin E1/CDK2 activation defines a key vulnerability to WEE1 kinase inhibition in gynecological cancers

Discrimination of single-point mutations in unamplified genomic DNA via Cas9 immobilized on a graphene field-effect transistor

Proton-enabled activation of peptide materials for biological bimodal memory

HISAT: a fast spliced aligner with low memory requirements

DDR2 controls the epithelial-mesenchymal-transition-related gene expression via c-Myb acetylation upon matrix stiffening

Reconsidering repurposing: long-term metformin treatment impairs cognition in Alzheimer’s model mice

Functional and evolutionary analysis of Korean bob-tailed native dog using whole-genome sequencing data

Biomaterials to model and measure epithelial cancers

Real-time in vivo two-photon imaging study reveals decreased cerebro-vascular volume and increased blood-brain barrier permeability in chronically stressed mice

Integration of multi-omics approaches for functional characterization of muscle related selective sweep genes in Nanchukmacdon

Holding of bovine blastocysts at suprazero temperatures using small molecules

Extracellular Matrix Rigidity-dependent Sphingosine-1-phosphate Secretion Regulates Metastatic Cancer Cell Invasion and Adhesion

K-means quantization for a web-based open-source flow cytometry analysis platform

A chromosome-level genome assembly of the Korean crossbred pig Nanchukmacdon (Sus scrofa)

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

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