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Showing 1–9 of 9 results

Advanced filters: Author: Dari Kimanius Clear advanced filters

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Chloroplasts of plants have ribosomes that are important for translation of core proteins involved in photosynthesis. Here, Perez Boerema et al. report a high-resolution cryo-EM structure of the spinach chlororibosome in complex with its accessory factors.

Annemarie Perez Boerema
Shintaro Aibara
A. Amunts
Research02 Apr 2018
Nature Plants

Volume: 4, P: 212-217
Data-driven regularization lowers the size barrier of cryo-EM structure determination

Blush regularization makes use of a neural network pre-trained on a diverse set of high-resolution cryo-EM half-maps to improve image alignment, effectively lowering the size barrier, during cryo-EM structure determination.

Dari Kimanius
Kiarash Jamali
Sjors H. W. Scheres
ResearchOpen Access11 Jun 2024
Nature Methods

Volume: 21, P: 1216-1221
Publisher Correction: Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Annemarie Perez Boerema
Shintaro Aibara
A. Amunts
Amendments and Corrections23 Jul 2018
Nature Plants

Volume: 4, P: 615
Automated model building and protein identification in cryo-EM maps

ModelAngelo builds atomic models and identifies proteins with unknown sequences in cryo-EM maps.

Kiarash Jamali
Lukas Käll
Sjors H. W. Scheres
ResearchOpen Access26 Feb 2024
Nature

Volume: 628, P: 450-457
DynaMight: estimating molecular motions with improved reconstruction from cryo-EM images

DynaMight models continuous structural heterogeneity in cryo-EM datasets, leading to an improved reconstruction of the consensus structure. The study also explores the issue of overfitting when modeling structural flexibility.

Johannes Schwab
Dari Kimanius
Sjors H. W. Scheres
ResearchOpen Access09 Aug 2024
Nature Methods

Volume: 21, P: 1855-1862
A realistic phantom dataset for benchmarking cryo-ET data annotation

A standardized, realistic phantom dataset consisting of ground-truth annotations for six diverse molecular species is provided as a community resource for cryo-electron-tomography algorithm benchmarking.

Ariana Peck
Yue Yu
Mohammadreza Paraan
ResearchOpen Access26 Aug 2025
Nature Methods

Volume: 22, P: 1819-1823
Disease-specific tau filaments assemble via polymorphic intermediates

A time-resolved cryogenic electron microscopy analysis provides structural information on the processes of primary and secondary nucleation of tau amyloid formation, with implications for the development of new therapies.

Sofia Lövestam
David Li
Sjors H. W. Scheres
ResearchOpen Access29 Nov 2023
Nature

Volume: 625, P: 119-125
Phage anti-CRISPR control by an RNA- and DNA-binding helix–turn–helix protein

The helix–turn–helix domain of an anti-CRISPR-associated (Aca) protein represses transcription of anti-CRISPR (Acr)-encoding genes and inhibits their translation to protein via distinct binding modes to DNA and RNA, respectively.

Nils Birkholz
Kotaro Kamata
Peter C. Fineran
Research10 Jul 2024
Nature

Volume: 631, P: 670-677
Structures of the human mitochondrial ribosome in native states of assembly

Cryo-EM structures of two late-stage assembly intermediates of the human mitoribosomal large subunit reveal the timing of rRNA folding and protein incorporation during the final steps of ribosomal maturation and identify two new assembly factors.

Alan Brown
Sorbhi Rathore
V Ramakrishnan
Research11 Sept 2017
Nature Structural & Molecular Biology

Volume: 24, P: 866-869