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Advanced filters: Author: Gemma I. Martínez-Redondo Clear advanced filters

FANTASIA leverages language models to decode the functional dark proteome across the animal tree of life

FANTASIA, a protein language model-based tool, enables large-scale functional annotation across ~1000 animal proteomes, revealing novel gene functions in both model and non-model organisms beyond homology-based methods.

Gemma I. Martínez-Redondo
Francisco M. Perez-Canales
Rosa Fernández
ResearchOpen Access14 Aug 2025
Communications Biology

Volume: 8, P: 1-8
An episodic burst of massive genomic rearrangements and the origin of non-marine annelids

An analysis of annelid genomes reveals massive reshuffling of chromosomes in the ancestral lineage leading to clitellates, a clade composed of non-marine annelids, with potential implications for the adaptation of clitellates to freshwater and terrestrial environments.

Carlos Vargas-Chávez
Lisandra Benítez-Álvarez
Rosa Fernández
Research18 Jun 2025
Nature Ecology & Evolution

Volume: 9, P: 1263-1279

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FANTASIA leverages language models to decode the functional dark proteome across the animal tree of life

An episodic burst of massive genomic rearrangements and the origin of non-marine annelids

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