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Showing 101–150 of 442 results
Advanced filters: Author: Joshua R. Lewis Clear advanced filters
  • Modulating mitochondrial NAD+ levels by changing the expression of the mitochondrial NAD+ transporter, SLC25A51, Mukherjee et al. demonstrate that mitochondrial, rather than cytosolic or nuclear, NAD+ levels are a key determinant of the rate of liver regeneration.

    • Sarmistha Mukherjee
    • Ricardo A. Velázquez Aponte
    • Joseph A. Baur
    ResearchOpen Access
    Nature Metabolism
    Volume: 7, P: 2424-2437
  • White matter hyperintensities (WMH) are a common brain-imaging feature of cerebral small vessel disease. Here, the authors carry out a GWAS and followup analyses for WMH-volume, implicating several variants with potential for risk stratification and drug targeting.

    • Muralidharan Sargurupremraj
    • Hideaki Suzuki
    • Stéphanie Debette
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-18
  • A genome-wide association study including over 76,000 individuals with schizophrenia and over 243,000 control individuals identifies common variant associations at 287 genomic loci, and further fine-mapping analyses highlight the importance of genes involved in synaptic processes.

    • Vassily Trubetskoy
    • Antonio F. Pardiñas
    • Jim van Os
    Research
    Nature
    Volume: 604, P: 502-508
  • Post-international travel quarantine has been widely implemented to mitigate SARS-CoV-2 transmission, but the impacts of such policies are unclear. Here, the authors used linked genomic and contact tracing data to assess the impacts of a 14-day quarantine on return to England in summer 2020.

    • Dinesh Aggarwal
    • Andrew J. Page
    • Ewan M. Harrison
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-13
  • Despite the progression of Actinium-225 (225Ac) radiopharmaceuticals, there is still a limited understanding of Ac coordination chemistry due to its radioactivity, poor availability, and lack of stable isotopes. Here, the authors demonstrate a platform to characterize the solution and solid-state behavior of the longest-lived Ac isotope, 227Ac.

    • Jennifer N. Wacker
    • Joshua J. Woods
    • Rebecca J. Abergel
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-8
  • Personalized prediction of tumor radiosensitivity would facilitate development of precision medicine workflows for cancer treatment. Here, the authors integrate machine learning and genome-scale metabolic modeling approaches to identify multi-omics biomarkers predictive of radiation response.

    • Joshua E. Lewis
    • Melissa L. Kemp
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • The cell adhesion molecule E-selectin regulates haematopoietic stem cell self-renewal in the bone marrow vascular niche. Here, the authors show E-selectin adhesion directly induces survival signaling in acute myeloid leukaemia and therapeutic inhibition improves chemotherapy outcomes in mice.

    • Valerie Barbier
    • Johanna Erbani
    • Ingrid G. Winkler
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Sulfur fluoride exchange (SuFEx) is a click reaction used to rapidly synthesize and discover functional molecules. In this Primer, Homer et al. discuss the essential elements of SuFEx operation, catalysis and SuFExable connective hubs and explore applications of SuFEx in drug development, polymer science and biochemistry.

    • Joshua A. Homer
    • Long Xu
    • John E. Moses
    Reviews
    Nature Reviews Methods Primers
    Volume: 3, P: 1-17
  • Lean body mass is a highly heritable trait and is associated with various health conditions. Here, Kiel and colleagues perform a meta-analysis of genome-wide association studies for whole body lean body mass and find five novel genetic loci to be significantly associated.

    • M. Carola Zillikens
    • Serkalem Demissie
    • Douglas P. Kiel
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-13
  • Phase-resolved mid-infrared observations from JWST of the hot gas giant WASP-43b detect a day–night difference of 659 ± 19 K. Comparison with climate models shows that the observations are compatible with cloudy skies, at least on the nightside, and the lack of methane detection suggests the presence of disequilibrium chemistry.

    • Taylor J. Bell
    • Nicolas Crouzet
    • Sebastian Zieba
    ResearchOpen Access
    Nature Astronomy
    Volume: 8, P: 879-898
  • During development of myointimal hyperplasia in human arteries, smooth muscle cells have hyperpolarized mitochondrial membrane potential (ΔΨm), high proliferation and apoptosis resistance; PDK2 is a key regulatory protein whose activation is necessary for myointima formation, and its blockade with dichloroacetate prevents Δψm hyperpolarization, facilitates apoptosis and reduces myointima formation in injured arteries, without preventing vessel re-endothelialization, possibly representing a novel strategy to prevent proliferative vascular diseases.

    • Tobias Deuse
    • Xiaoqin Hua
    • Sonja Schrepfer
    Research
    Nature
    Volume: 509, P: 641-644
  • The response to infectious and inflammatory challenges differs among people but the reasons for this are poorly understood. Here the authors explore the impact of variables such as age, sex, and the capacity for controlling inflammation and maintaining immunocompetence, linking this capacity to favourable health outcomes and lifespan.

    • Sunil K. Ahuja
    • Muthu Saravanan Manoharan
    • Weijing He
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-31
  • T cell antigen receptor stimulation by the ligand antigen triggers multiple downstream pathways that affect CD4 + T cell function. Here authors show that activation of the downstream WNK1 kinase causes water entry into the cells, which is essential for CD4+ T cell proliferation.

    • Joshua Biggs O’May
    • Lesley Vanes
    • Victor L. J. Tybulewicz
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Post-infectious myalgic encephalomyelitis/chronic fatigue syndrome (PI-ME/CFS) is a disabling disorder, yet the clinical phenotype is poorly defined and the pathophysiology unknown. Here, the authors conduct deep phenotyping of a cohort of PI-ME/CFS patients.

    • Brian Walitt
    • Komudi Singh
    • Avindra Nath
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-29
  • This study provides a nucleotide-level survey of genome variation in 63 Saccharomyces cerevisiae strains sampled from different ecological niches and geographical locations. The analysis of genome-wide patterns of the nucleotide polymorphism and deletion variants discovered lays the foundation for genome-wide association studies in yeast.

    • Joseph Schacherer
    • Joshua A. Shapiro
    • Leonid Kruglyak
    Research
    Nature
    Volume: 458, P: 342-345
  • The Suzuki-Miyaura coupling (SMC) is widely used in C-C bond forming reactions but the dominant mode of transmetalation remains controversial. Here the authors report a mechanistic study of a Pd catalyzed SMC under biphasic conditions where using phase transfer catalysts shifts the dominant mode of transmetalation resulting in rate enhancement.

    • Yao Shi
    • Joshua S. Derasp
    • Jason E. Hein
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • The role of pathogenic mitochondrial DNA (mtDNA) mutation in cancer remains to be studied. Here the authors show that high mtDNA mutation burden in lung cancer models leads to increased glycolysis but limited de novo serine synthesis, rendering sensitivity to dietary serine and glycine deprivation.

    • Eduardo Cararo Lopes
    • Fuqian Shi
    • Eileen White
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • A multi-modal analysis of pre-metastatic liver biopsies from patients with localized pancreatic cancer with a minimum of 3 years of follow-up shows that immunological, proliferative and metabolomic features distinguish patients who develop metastases from disease-free survivors and can be used to predict outcomes.

    • Linda Bojmar
    • Constantinos P. Zambirinis
    • David Lyden
    Research
    Nature Medicine
    Volume: 30, P: 2170-2180
  • Stratified medicine promises to tailor treatment for individual patients, however it remains a major challenge to leverage genetic risk data to aid patient stratification. Here the authors introduce an approach to stratify individuals based on the aggregated impact of their genetic risk factor profiles on tissue-specific gene expression levels, and highlight its ability to identify biologically meaningful and clinically actionable patient subgroups, supporting the notion of different patient ‘biotypes’ characterized by partially distinct disease mechanisms.

    • Lucia Trastulla
    • Georgii Dolgalev
    • Michael J. Ziller
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-28
  • Munger et al. show that infection with human cytomegalovirus upregulates fatty acid biosynthesis and that pharmacological inhibition of this pathway inhibits replication of both this virus and influenza A. This approach, the first to reliably map major carbon fluxes in mammalian cells, extends the promise of metabolomics from diagnostic applications to identification of new therapeutic concepts.

    • Joshua Munger
    • Bryson D Bennett
    • Joshua D Rabinowitz
    Research
    Nature Biotechnology
    Volume: 26, P: 1179-1186
  • CRISPR/Cas9-based homing gene drives have emerged as a potential new approach to mosquito control. Here the authors use transgenic lines with germline-specific regulatory elements to express Cas9 and achieve up to 94% inheritance bias, closing the gap between A. aegyptidrives and the highly efficient drives observed in Anopheles species.

    • Michelle A. E. Anderson
    • Estela Gonzalez
    • Luke Alphey
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-9
  • SLEAP is a versatile deep learning-based multi-animal pose-tracking tool designed to work on videos of diverse animals, including during social behavior.

    • Talmo D. Pereira
    • Nathaniel Tabris
    • Mala Murthy
    ResearchOpen Access
    Nature Methods
    Volume: 19, P: 486-495
  • Type IV pili (T4P) are retractile appendages used by bacteria for DNA uptake and other purposes. T4P extension is thought to occur through the action of a single motor protein, PilB. Here, Ellison et al. show that T4P synthesis in Acinetobacter baylyi depends not only on PilB but also on an additional, distinct motor, TfpB.

    • Courtney K. Ellison
    • Triana N. Dalia
    • Ankur B. Dalia
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • The specifics of the pediatric immune response that gives rise to antibodies capable of neutralising diverse HIV-1 strains is not fully understood. Here the authors characterise the immune environment of Simian-HIV infected paediatric macaques and link to antibody neutralisation induction.

    • Sommer Holmes
    • Hui Li
    • Wilton B. Williams
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-23
  • The decision to form a fruiting body have been studied extensively, however, the mechanical events that trigger the creation of multiple cell layers is poorly understood. Here the authors find M. xanthus cells adjust their reversal frequency to control mechanical stresses that triggers layer formation in the colonies.

    • Endao Han
    • Chenyi Fei
    • Joshua W. Shaevitz
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • Analysis of mitochondrial genomes (mtDNA) by using whole-genome sequencing data from 2,658 cancer samples across 38 cancer types identifies hypermutated mtDNA cases, frequent somatic nuclear transfer of mtDNA and high variability of mtDNA copy number in many cancers.

    • Yuan Yuan
    • Young Seok Ju
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 342-352
  • An inadequate supply of cofactors often limits the production of target molecules in metabolic engineering. Here, the authors report cofactor engineering through decompartmentalization of the yeast mitochondrial metabolism to improve succinic acid production in Issatchenkia orientalis.

    • Vinh G. Tran
    • Shih-I Tan
    • Huimin Zhao
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Identification of an improved glucose-6-phosphate dehydrogenase (G6PD) inhibitor G6PDi-1 blocks G6PD activity more robustly than the widely cited antagonist DHEA. G6PDi-1 treatment blocks T cell cytokine production and neutrophil oxidative burst.

    • Jonathan M. Ghergurovich
    • Juan C. García-Cañaveras
    • Joshua D. Rabinowitz
    Research
    Nature Chemical Biology
    Volume: 16, P: 731-739
  • The US COVID-19 Scenario Modeling Hub produced medium to long term projections based on different epidemic scenarios. In this study, the authors evaluate 14 rounds of projections by comparing them to the epidemic trajectories that occurred, and discuss lessons learned for future similar projects.

    • Emily Howerton
    • Lucie Contamin
    • Justin Lessler
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Kinase inhibitors are widely used to treat cancer, however patients frequently develop resistance. Here, the authors investigate adaption mechanisms during drug persistence and show that stimulation of the innate immunity sensor RIG-I enhances cancer cell death when combined with kinase inhibition.

    • Johannes Brägelmann
    • Carina Lorenz
    • Martin L. Sos
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • Insufficient AHR activation has been suggested in SLE, and augmenting AHR activation therapeutically may prevent CXCL13+ TPH/TFH differentiation and the subsequent recruitment of B cells and formation of lymphoid aggregates in inflamed tissues.

    • Calvin Law
    • Vanessa Sue Wacleche
    • Deepak A. Rao
    Research
    Nature
    Volume: 631, P: 857-866
  • Analysis of whole-genome sequencing data across 2,658 tumors spanning 38 cancer types shows that chromothripsis is pervasive, with a frequency of more than 50% in several cancer types, contributing to oncogene amplification, gene inactivation and cancer genome evolution.

    • Isidro Cortés-Ciriano
    • Jake June-Koo Lee
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 331-341
  • The dayside thermal emission spectrum and brightness temperature map of the ultra-hot Jupiter WASP-18b obtained from the NIRISS instrument on the JWST showed water emission features, an atmosphere consistent with solar metallicity, as well as a steep and symmetrical decrease in temperature towards the nightside.

    • Louis-Philippe Coulombe
    • Björn Benneke
    • Peter J. Wheatley
    ResearchOpen Access
    Nature
    Volume: 620, P: 292-298
  • The civil war in Mozambique led to the collapse of large-mammal populations and the spread of the invasive plant Mimosa pigra. Experimental exclosures and DNA metabarcoding are used to show how trophic rewilding since the end of the war has reduced the invasive population.

    • Jennifer A. Guyton
    • Johan Pansu
    • Robert M. Pringle
    Research
    Nature Ecology & Evolution
    Volume: 4, P: 712-724