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Showing 401–450 of 1466 results
Advanced filters: Author: L. Ding Clear advanced filters
  • At least two-thirds of supratentorial ependymomas contain oncogenic fusions between RELA, the principal effector of nuclear factor-κB (NF-κB) signalling, and uncharacterized gene C11orf95; C11orf95–RELA fusion proteins translocate spontaneously to the nucleus to activate NF-κB target genes, and rapidly transform neural stem cells to form tumours in mice

    • Matthew Parker
    • Kumarasamypet M. Mohankumar
    • Richard J. Gilbertson
    Research
    Nature
    Volume: 506, P: 451-455
  • Knowing whether a quantum phase transition is first- or second-order is crucial for understanding any associated exotic phenomena, but direct experimental evidence has been scarce. Here, Frandsen et al. report first-order magnetic quantum phase transitions in archetypal Mott systems, providing insight into the underlying quantum fluctuations.

    • Benjamin A. Frandsen
    • Lian Liu
    • Yasutomo J. Uemura
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-8
  • Proteins involved in epigenetic regulation are frequently mutated in several paediatric cancers. Here, Huether et al.characterize the somatic mutation frequency across 21 paediatric cancer subtypes by sequencing 633 epigenetic genes in over 1,000 tumours; generating a rich data set for investigating epigenetic dysregulation.

    • Robert Huether
    • Li Dong
    • James R. Downing
    Research
    Nature Communications
    Volume: 5, P: 1-7
  • This report from the 1000 Genomes Project describes the genomes of 1,092 individuals from 14 human populations, providing a resource for common and low-frequency variant analysis in individuals from diverse populations; hundreds of rare non-coding variants at conserved sites, such as motif-disrupting changes in transcription-factor-binding sites, can be found in each individual.

    • Gil A. McVean
    • David M. Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 491, P: 56-65
  • An integrated transcriptome, genome, methylome and proteome analysis of over 200 lung adenocarcinomas reveals high rates of somatic mutations, 18 statistically significantly mutated genes including RIT1 and MGA, splicing changes, and alterations in MAPK and PI(3)K pathway activity.

    • Eric A. Collisson
    • Joshua D. Campbell
    • Ming-Sound Tsao
    ResearchOpen Access
    Nature
    Volume: 511, P: 543-550
  • Brigger et al. show that adipose tissue eosinophil dysfunction with age underpins physiological features of ageing, including global inflammation, loss of physical fitness and myeloid skewing. Eosinophils transferred from young to aged mice reversed these features and improved immunological fitness in old age, in part via IL-4.

    • Daniel Brigger
    • Carsten Riether
    • Alexander Eggel
    Research
    Nature Metabolism
    Volume: 2, P: 688-702
  • The Human Microbiome Project Consortium reports the first results of their analysis of microbial communities from distinct, clinically relevant body habitats in a human cohort; the insights into the microbial communities of a healthy population lay foundations for future exploration of the epidemiology, ecology and translational applications of the human microbiome.

    • Curtis Huttenhower
    • Dirk Gevers
    • Owen White
    ResearchOpen Access
    Nature
    Volume: 486, P: 207-214
  • 1000 Genomes imputation can increase the power of genome-wide association studies to detect genetic variants associated with human traits and diseases. Here, the authors develop a method to integrate and analyse low-coverage sequence data and SNP array data, and show that it improves imputation performance.

    • Olivier Delaneau
    • Jonathan Marchini
    • Leena Peltonenz
    Research
    Nature Communications
    Volume: 5, P: 1-9
  • 'Silver-bullet' approaches to conservation assume that conservation strategy can be based on the distribution of species in one or two well known taxonomic groups, as there is high cross-taxon congruence in large-scale patterns of biodiversity. Although birds, mammals and amphibians show similar patterns in terms of overall species richness, the distribution of threatened and rare species is found to be different in each group.

    • Richard Grenyer
    • C. David L. Orme
    • Ian P. F. Owens
    Research
    Nature
    Volume: 444, P: 93-96
  • Sequencing of over 600 genes in a large collection of lung adenocarcinoma samples provides an overview of somatic mutations and signalling pathways altered in cancer genes in this tumour type.

    • Li Ding
    • Gad Getz
    • Richard K. Wilson
    Research
    Nature
    Volume: 455, P: 1069-1075
  • Self-referenced attosecond streaking enables in situ measurements of Auger emission in atomic neon excited by femtosecond pulses from an X-ray free-electron laser with subfemtosecond time resolution and despite the jitter inherent to X-ray free-electron lasers.

    • D. C. Haynes
    • M. Wurzer
    • A. L. Cavalieri
    Research
    Nature Physics
    Volume: 17, P: 512-518
  • All components of the proton–proton nuclear fusion chain, in which hydrogen is converted into helium in the Sun, are described, with several implications for fundamental solar and particle physics.

    • M. Agostini
    • K. Altenmüller
    • G. Zuzel
    Research
    Nature
    Volume: 562, P: 505-510
  • The authors generated a mutant mouse with neuron-specific reductions in brain cytochrome P450 activity. These mice have attenuated morphine antinociception, which suggests that neuronal P450 epoxygenase mediates the pain-relieving properties of morphine.

    • Jennie L Conroy
    • Cheng Fang
    • Lindsay B Hough
    Research
    Nature Neuroscience
    Volume: 13, P: 284-286
  • An array-based high-throughput approach termed Escherichia coli synthetic genetic array, or eSGA, now allows comprehensive genetic interaction screens in bacteria. The method makes use of bacterial conjugation and robotic technology to generate double mutants on a genome-wide scale. In this issue, another paper presents GIANT-coli, a very similar approach.

    • Gareth Butland
    • Mohan Babu
    • Andrew Emili
    Research
    Nature Methods
    Volume: 5, P: 789-795
  • Using cryo-electron microscopy, the authors reveal the mechanism by which perampanel-like molecules inhibit AMPA receptors. They show that the inhibitors decouple the ligand-binding domain from the ion channel after neurotransmitter binding and outcompete positive modulators.

    • W. Dylan Hale
    • Alejandra Montaño Romero
    • Edward C. Twomey
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 31, P: 1669-1679
  • There is substantial interest in the development of base metal molecular catalysts for hydrogen generation. Here, the authors report a nitrosyl-containing diiron complex, and study its versatile electrochemical behaviour, which is due to the two unique iron sites and the redox active nitrosyl ligands.

    • Chung-Hung Hsieh
    • Shengda Ding
    • Marcetta Y. Darensbourg
    Research
    Nature Communications
    Volume: 5, P: 1-8
  • Whole-genome sequencing of medulloblastoma samples reveals several recurrent mutations in genes not previously implicated in the disease, many of which affect components of the epigenetic machinery in different disease subgroups.

    • Giles Robinson
    • Matthew Parker
    • Richard J. Gilbertson
    ResearchOpen Access
    Nature
    Volume: 488, P: 43-48
  • Scientists study the coupling, guiding and polarizing of electromagnetic waves in graphene and demonstrate a graphene-based fibre polarizer that exhibits a transverse-electric-pass polarization at an extinction ratio of up to ∼27 dB in the telecommunications band.

    • Qiaoliang Bao
    • Han Zhang
    • Kian Ping Loh
    Research
    Nature Photonics
    Volume: 5, P: 411-415
  • The Genomic Data Commons repository contains genomic, epigenomic, proteomic and clinical data from the TCGA and TARGET datasets. Here, the authors describe the analysis methods for how these divergent datasets were integrated together.

    • Zhenyu Zhang
    • Kyle Hernandez
    • Robert L. Grossman
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11
  • Dendritic cells initiate and regulate adaptive immunity and differ according to gut anatomical location. Here the authors show that DC residing in the upper and lower intestines show differential PD-L1 and XCR1 expression and drive specific T cell responses to prevent gut inflammation.

    • Thais G. Moreira
    • Davide Mangani
    • Howard L. Weiner
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Ageing causes an inability to replace damaged tissue. Here, the authors perform proteomics analyses of human haematopoietic stem cells and other cells in the bone marrow niche at different ages and show changes in central carbon metabolism, reduced bone marrow niche function, and enhanced myeloid differentiation.

    • Marco L. Hennrich
    • Natalie Romanov
    • Anthony D. Ho
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-18
  • A cell-based phenotypic screen identifying inhibitors of Notch signaling led to the discovery of NVS-ZP7-4, which blocks the activity of the zinc transporter SLC39a7 (ZIP7) and induces cell death through an ER stress mechanism.

    • Erin Nolin
    • Sara Gans
    • Christy J. Fryer
    Research
    Nature Chemical Biology
    Volume: 15, P: 179-188
  • Adeno-associated viruses (AAVs) can be targeted in a tissue-specific manner, but their tissue accumulation cannot be assessed in a non-invasive manner. Here the authors conjugate a multivalent chelator labelled with Cu-64 to the surface of AAVs and image the brain accumulation of the PHB.eB capsid by PET.

    • Jai Woong Seo
    • Elizabeth S. Ingham
    • Katherine W. Ferrara
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Triggering and sustaining fusion reactions — with the goal of overall energy production — in a tokamak plasma requires efficient heating. Radio-frequency heating of a three-ion plasma is now experimentally shown to be a potentially viable technique.

    • Ye. O. Kazakov
    • J. Ongena
    • I. Zychor
    Research
    Nature Physics
    Volume: 13, P: 973-978
  • John Chambers, Jaspal Kooner, Pim van der Harst, Shyong Tai, Paul Elliott, Jiang He, Norihiro Kato and colleagues performed a genome-wide association study of blood pressure phenotypes in individuals of European, East Asian and South Asian ancestry. They find trait-associated SNPs at 12 loci, some of which are associated with methylation at nearby CpG sites.

    • Norihiro Kato
    • Marie Loh
    • John C Chambers
    Research
    Nature Genetics
    Volume: 47, P: 1282-1293
  • Plasma fusion devices like tokamaks are important for energy generation but there are many challenges for their steady state operation. Here, the authors show that full divertor detachment is compatible with high-confinement high-poloidal-beta core plasmas and this prevents the damage to the divertor target plates and the first wall.

    • L. Wang
    • H. Q. Wang
    • J. B. Liu
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • Biosynthesis of the protease inhibitor microviridin J includes peptide macrocyclization catalyzed by two enzymes of the ATP-grasp family. Structures of these macrocyclases, MdnB and MdnC, reveal how they recognize their precursor-peptide substrates.

    • Kunhua Li
    • Heather L Condurso
    • Steven D Bruner
    Research
    Nature Chemical Biology
    Volume: 12, P: 973-979
  • O-polysaccharide is a major constituent of the bacterial cell wall, yet little mechanistic information is known about its biosynthesis. A reconstruction of this pathway using defined substrates now demonstrates the basis for sugar polymerization and length modulation.

    • Robert Woodward
    • Wen Yi
    • Peng George Wang
    Research
    Nature Chemical Biology
    Volume: 6, P: 418-423
  • Variable number tandem repeats (VNTRs) are implicated in human diseases yet have been difficult to analyse computationally. Here, the authors describe a neural network method, adVNTR-NN, that allows rapid and accurate genotyping of VNTRs from large whole genome sequencing datasets.

    • Mehrdad Bakhtiari
    • Jonghun Park
    • Vineet Bafna
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • SHANK3 mutations have been linked to autism spectrum disorders, although the underlying mechanisms remain unclear. Here, the authors generate a complete knockout Shank3 mouse model, identifying ASD-like behaviours associated with impaired mGluR5-Homer scaffolding and abnormal brain connectivity.

    • Xiaoming Wang
    • Alexandra L. Bey
    • Yong-hui Jiang
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-18
  • The energy loss of ions in plasma is a challenging issue in inertial confinement fusion and many theoretical models exist on ion-stopping power. Here, the authors use laser-generated plasma probed by accelerator-produced ions in experiments to discriminate various ion stopping models near the Bragg peak.

    • W. Cayzac
    • A. Frank
    • M. Roth
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-7
  • Specific titanium alloys combine transformation-induced plasticity and twinning-induced plasticity for improved work hardening. Here, the authors show that these alloys also have an ultra-large fracture resistance and an unexpected fracture mechanism via dynamic recrystallization and local melting in a deformation band.

    • L. Choisez
    • L. Ding
    • P. J. Jacques
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-8
  • A randomized trial in patients hospitalized with COVID-19 showed no benefit and potentially increased harm associated with the use of convalescent plasma, with subgroup analyses suggesting that the antibody profile in donor plasma is critical in determining clinical outcomes.

    • Philippe Bégin
    • Jeannie Callum
    • Donald M. Arnold
    ResearchOpen Access
    Nature Medicine
    Volume: 27, P: 2012-2024
  • A laser-based scheme for the simultaneous generation of two temporally synchronized electron beams with individually adjustable energies offers new opportunities for ultrafast pump–probe experiments.

    • J. Wenz
    • A. Döpp
    • S. Karsch
    Research
    Nature Photonics
    Volume: 13, P: 263-269
  • While it is known that the El Niño–Southern Oscillation (ENSO) influences tropical cyclones, but little is known about a reverse effect. Here, data and model output shows that tropical cyclones can affect ENSO with a lead of 3 months, especially contributing to a significantly more intense El Niño in the winter months.

    • Qiuyun Wang
    • Jianping Li
    • Yidan Xu
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-13
  • A chemically complex alloy that exhibits a high elastic strain limit and low internal friction is described; it also has an Elinvar effect (invariant elastic modulus) over a large temperature range, up to 627 °C.

    • Q. F. He
    • J. G. Wang
    • Y. Yang
    Research
    Nature
    Volume: 602, P: 251-257
  • The neural dynamics underlying speech comprehension are not well understood. Here, the authors show that phonemic-to-lexical processing is localized to a large region of the temporal cortex, and that segmentation of the speech stream occurs mostly at the level of diphones.

    • Xue L. Gong
    • Alexander G. Huth
    • Frédéric E. Theunissen
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • Statins are effectively used to prevent and manage cardiovascular disease, but patient response to these drugs is highly variable. Here, the authors identify two new genes associated with the response of LDL cholesterol to statins and advance our understanding of the genetic basis of drug response.

    • Iris Postmus
    • Stella Trompet
    • Chris C. A. Spencer
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-10