Nature Search

Human retinoic acid–regulated CD161⁺ regulatory T cells support wound repair in intestinal mucosa

T_reg cells are essential for enforcing peripheral tolerance but can also influence tissue regeneration. Afzali and colleagues use high-dimensional analysis to describe a distinct population of CD161⁺ human T_reg cells involved in wound healing of the intestinal mucosa.

Giovanni A. M. Povoleri
Estefania Nova-Lamperti
Behdad Afzali
Research05 Nov 2018
Nature Immunology

Volume: 19, P: 1403-1414
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Tumor–normal paired DNA samples from a breast cancer cell line and a matched lymphoblastoid cell line enable calibration of clinical sequencing pipelines and benchmarking ‘tumor-only’ or ‘matched tumor–normal’ analyses.

Li Tai Fang
Bin Zhu
Yuanting Zheng
Research09 Sept 2021
Nature Biotechnology

Volume: 39, P: 1151-1160
Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

Recommendations are given on optimal read coverage and selection of calling algorithm to maximize the reproducibility of cancer mutation detection in whole-genome or whole-exome sequencing.

Wenming Xiao
Luyao Ren
Leming Shi
Research09 Sept 2021
Nature Biotechnology

Volume: 39, P: 1141-1150
The PPR domain of mitochondrial RNA polymerase is an exoribonuclease required for mtDNA replication in Drosophila melanogaster

Liu et al. report that Drosophila melanogaster mitochondrial RNA polymerase harbours an intrinsic 3′-to-5′ exoribonuclease activity that enables it to generate short RNA primers for mitochondrial DNA replication.

Yi Liu
Zhe Chen
Hong Xu
Research21 Apr 2022
Nature Cell Biology

Volume: 24, P: 757-765
High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data

Adrien M. Butty
Tatiane C. S. Chud
Christine F. Baes
ResearchOpen Access15 May 2020
Scientific Reports

Volume: 10, P: 1-13
Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways

The authors obtained transcriptomes from anterior cingulate cortex and amygdala samples from post-mortem brains of individuals with bipolar disorder and neurotypical controls. They observed decreased expression of neuroimmune and synaptic pathways.

Peter P. Zandi
Andrew E. Jaffe
Thomas M. Hyde
Research07 Mar 2022
Nature Neuroscience

Volume: 25, P: 381-389
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

The Sequencing Quality Control (SEQC) consortium shows that junction discovery and differential gene expression profiling with RNA-seq can be robust but transcript-level and absolute measurements remain challenging.

Zhenqiang Su
Paweł P Łabaj
Leming Shi
Research24 Aug 2014
Nature Biotechnology

Volume: 32, P: 903-914
Pathogenic TERT promoter variants in telomere diseases

Fernanda Gutierrez-Rodrigues
Flávia S. Donaires
Neal S. Young
ResearchOpen Access07 Dec 2018
Genetics in Medicine

Volume: 21, P: 1594-1602
Investigating rare pathogenic/likely pathogenic exonic variation in bipolar disorder

Xiaoming Jia
Fernando S. Goes
Laura J. Scott
ResearchOpen Access22 Jan 2021
Molecular Psychiatry

Volume: 26, P: 5239-5250
Whole-exome sequencing of 81 individuals from 27 multiply affected bipolar disorder families

Andreas J. Forstner
Sascha B. Fischer
Sven Cichon
ResearchOpen Access04 Feb 2020
Translational Psychiatry

Volume: 10, P: 1-10
lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA

Fayaz Seifuddin
Komudi Singh
Mehdi Pirooznia
ResearchOpen Access05 Oct 2020
Scientific Data

Volume: 7, P: 1-16
Search for common targets of lithium and valproic acid identifies novel epigenetic effects of lithium on the rat leptin receptor gene

R S Lee
M Pirooznia
J B Potash
ResearchOpen Access14 Jul 2015
Translational Psychiatry

Volume: 5, P: e600
Correction: Investigating rare pathogenic/likely pathogenic exonic variation in bipolar disorder

Xiaoming Jia
Fernando S. Goes
Laura J. Scott
Amendments and Corrections05 Mar 2021
Molecular Psychiatry

Volume: 26, P: 5251
DIXDC1 contributes to psychiatric susceptibility by regulating dendritic spine and glutamatergic synapse density via GSK3 and Wnt/β-catenin signaling

P-M Martin
R E Stanley
B N R Cheyette
Research18 Oct 2016
Molecular Psychiatry

Volume: 23, P: 467-475
Metamoodics: meta-analysis and bioinformatics resource for mood disorders

M Pirooznia
F Seifuddin
P P Zandi
Correspondence10 Sept 2013
Molecular Psychiatry

Volume: 19, P: 748-749
A genome-wide association study of attempted suicide

V L Willour
F Seifuddin
J B Potash
Research22 Mar 2011
Molecular Psychiatry

Volume: 17, P: 433-444
Genome-wide association of mood-incongruent psychotic bipolar disorder

F S Goes
M L Hamshere
J B Potash
ResearchOpen Access23 Oct 2012
Translational Psychiatry

Volume: 2, P: e180
Genome-wide DNA hydroxymethylation identifies potassium channels in the nucleus accumbens as discriminators of methamphetamine addiction and abstinence

J L Cadet
C Brannock
R S Lee
ResearchOpen Access05 Apr 2016
Molecular Psychiatry

Volume: 22, P: 1196-1204
High-throughput sequencing of the synaptome in major depressive disorder

M Pirooznia
T Wang
F S Goes
Research28 Jul 2015
Molecular Psychiatry

Volume: 21, P: 650-655

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Human retinoic acid–regulated CD161⁺ regulatory T cells support wound repair in intestinal mucosa

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

The PPR domain of mitochondrial RNA polymerase is an exoribonuclease required for mtDNA replication in Drosophila melanogaster

High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data

Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Pathogenic TERT promoter variants in telomere diseases

Investigating rare pathogenic/likely pathogenic exonic variation in bipolar disorder

Whole-exome sequencing of 81 individuals from 27 multiply affected bipolar disorder families

lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA

Search for common targets of lithium and valproic acid identifies novel epigenetic effects of lithium on the rat leptin receptor gene

Correction: Investigating rare pathogenic/likely pathogenic exonic variation in bipolar disorder

DIXDC1 contributes to psychiatric susceptibility by regulating dendritic spine and glutamatergic synapse density via GSK3 and Wnt/β-catenin signaling

Metamoodics: meta-analysis and bioinformatics resource for mood disorders

A genome-wide association study of attempted suicide

Genome-wide association of mood-incongruent psychotic bipolar disorder

Genome-wide DNA hydroxymethylation identifies potassium channels in the nucleus accumbens as discriminators of methamphetamine addiction and abstinence

High-throughput sequencing of the synaptome in major depressive disorder

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