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Showing 1–7 of 7 results
Advanced filters: Author: Marco Tulio Angulo Clear advanced filters

  • Small distinctive patterns or ‘motifs’ are more prevalent in real systems than they are in randomly generated networks. It now seems that these motifs emerge naturally according to a principle that favours interconnections biased towards stability.

    • Marco Tulio Angulo
    • Yang-Yu Liu
    • Jean-Jacques Slotine
    Research
    Nature Physics
    Volume: 11, P: 848-852

  • Using deep learning to identify the assembly rules of microbial communities from different habitats, the authors develop a framework to quantify and predict the community-specific keystoneness of each species in any microbiome sample.

    • Xu-Wen Wang
    • Zheng Sun
    • Yang-Yu Liu
    Research
    Nature Ecology & Evolution
    Volume: 8, P: 22-31

  • Here, the authors present a theoretical framework based on community ecology and network science to investigate the efficacy of fecal microbiota transplantation in conditions associated with a disrupted gut microbiota, using the recurrent Clostridioides difficile infection as a prototype disease.

    • Yandong Xiao
    • Marco Tulio Angulo
    • Yang-Yu Liu
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17

  • Controlling microbial communities could help restore ecosystems and maintain healthy microbiota. Here, the authors introduce the notion of structural accessibility and develop a framework to identify minimal sets of driver species, manipulation of which could allow control of a microbial community.

    • Marco Tulio Angulo
    • Claude H. Moog
    • Yang-Yu Liu
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12

  • Understanding ecological interactions in microbial communities is limited by lack of informative longitudinal abundance data necessary for reliable inference. Here, Xiao et al. develop a method to infer the interactions between microbes based on their abundances in steady-state samples.

    • Yandong Xiao
    • Marco Tulio Angulo
    • Yang-Yu Liu
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12