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Showing 51–100 of 331 results
Advanced filters: Author: Michiel Min Clear advanced filters
  • The long noncoding RNA AMANZI downregulates IL-1β expression and trained immunity by inducing IL-37 transcription via long-range chromatin contacts. The common variant rs16944 present in AMANZI modulates proinflammation or immunosuppression risk.

    • Ezio T. Fok
    • Simone J. C. F. M. Moorlag
    • Musa M. Mhlanga
    Research
    Nature Genetics
    Volume: 56, P: 85-99
  • Neugebauer et al. show activation of the usually silenced embryonic factor DUX4 by herpesviruses in vitro and in patients, and demonstrate that depletion of DUX4 by nanobody degraders abrogates viral replication.

    • Eva Neugebauer
    • Stephanie Walter
    • Florian Full
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • The NuRD complex plays an important role in regulating lineage commitment and cell fate during early embryonic development. Here the authors present an integrative analysis of MBD3/NuRD composition and binding in mouse embryonic stem cells and neural progenitor cells, providing a molecular basis for genome-wide NuRD localization

    • Susan L. Kloet
    • Ino D. Karemaker
    • Michiel Vermeulen
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • Recent advances in computational methods have enabled the predictive design of self-assembling protein nanomaterials with atomic-level accuracy. Here authors investigate the assembly of two computationally designed, 120-subunit icosahedral complexes and find that assembly of each material from its two constituent protein building blocks was highly cooperative.

    • Adam J. Wargacki
    • Tobias P. Wörner
    • Neil P. King
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • Polycomb Repressive Complex 2 (PRC2) plays critical roles in transcriptional silencing during development. Here the authors identify EZHIP as a cofactor of PRC2 expressed predominantly in the gonads, finding that EZHIP limits the enzymatic activity of PRC2 in germ cells in mice.

    • Roberta Ragazzini
    • Raquel Pérez-Palacios
    • Raphaël Margueron
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-18
  • Bisphenol A (BPA) is an essential building block for manufacturing plastics, but its adverse health effects have become a major concern. Here the authors show a zeolite-catalysed synthetitic route to bio-renewable BPA alternatives that feature excellent safety and preserve efficacy of function.

    • Laura Trullemans
    • Steven-Friso Koelewijn
    • Bert F. Sels
    Research
    Nature Sustainability
    Volume: 6, P: 1693-1704
  • By characterizing the composition of mitochondrial-derived vesicles (MDVs), König et al. define a MIRO1/2- and DRP1-dependent MDV biogenesis pathway and propose that MDVs maintain the mitochondrial proteome by shuttling assembled protein complexes to lysosomes.

    • Tim König
    • Hendrik Nolte
    • Heidi M. McBride
    Research
    Nature Cell Biology
    Volume: 23, P: 1271-1286
  • Producing ultrastable metallic glasses has always been associated with substrates heated close to the glass transition temperature. Here, the authors show that reducing the deposition rate of the metallic glass on a cold substrate produces ultrastable metallic glasses with remarkably improved stability.

    • P. Luo
    • C. R. Cao
    • W. H. Wang
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-7
  • Self-assembling proteins that form capsid-like structures act as molecular containers for diverse cargoes. Here, the authors solve the cryo-EM structures of lumazine synthase shells, and show that supercharged mutants form expanded assemblies, indicating that electrostatics can be exploited to engineer cage architecture.

    • Eita Sasaki
    • Daniel Böhringer
    • Donald Hilvert
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-10
  • Nanoplatelets can be used as anisotropic building blocks for constructing novel optoelectronic materials. Here, Wang et al. show a route of assembling nanoplatelets with controllable positional and orientational order in three dimensions facilitated by the surface tension of drying emulsion droplets.

    • Da Wang
    • Michiel Hermes
    • Alfons van Blaaderen
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Immune checkpoint blockade has become standard care for patients with recurrent metastatic head and neck squamous cell carcinoma (HNSCC). Here the authors present the results of a non-randomized phase Ib/IIa trial, reporting safety and efficacy of neoadjuvant nivolumab monotherapy and nivolumab plus ipilimumab prior to standard-of-care surgery in patients with HNSCC. .

    • Joris L. Vos
    • Joris B. W. Elbers
    • Charlotte L. Zuur
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • A liver-intrinsic mechanism is presented that suppresses effective anti-hepatitis virus B responses in mice and humans by rendering virus-specific CD8 T cells refractory to activation causing loss of effector functions.

    • Miriam Bosch
    • Nina Kallin
    • Percy A. Knolle
    ResearchOpen Access
    Nature
    Volume: 631, P: 867-875
  • Single-particle tracking PALM (sptPALM) provides quantitative information in vivo if the protein of interest remains in a single diffusional state during track acquisition. Here the authors develop a custom-built sptPALM microscope and a Monte-Carlo based diffusion distribution analysis to study dynamic DNA-dCas9 interactions in live bacteria.

    • Koen J. A. Martens
    • Sam P. B. van Beljouw
    • Johannes Hohlbein
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • Linking microscale cellular structures to macroscale features of the brain is required to fully understand its structure and function. Here, the authors present a resource which combines multi-contrast microscopy and MRI of a single whole macaque brain to facilitate multimodal analyses.

    • Amy F. D. Howard
    • Istvan N. Huszar
    • Karla L. Miller
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-18
  • Mammalian genomes are scattered with repetitive sequences, but their biology remains largely elusive. Here, the authors show that transcription can initiate from short tandem repetitive sequences, and that genetic variants linked to human diseases are preferentially found at repeats with high transcription initiation level.

    • Mathys Grapotte
    • Manu Saraswat
    • Charles-Henri Lecellier
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-18
  • Spiradenoma and cylindroma are skin adnexal tumors that can behave aggressively and undergo malignant transformation. Here, the authors genetically assess a cohort of these adnexal tumours, highlighting recurrent ALPK1 mutations and revealing the genomic landscape of these rare tumours.

    • Mamunur Rashid
    • Michiel van der Horst
    • David J. Adams
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-10
  • Mutations in PPARγ lead to lipodystrophy, but the mechanisms by which the mutations affect the activity in chromatin is unknown. Here, Madsen, Broekema et al. showed that mutations affecting two intermolecular interactions compromise chromatin remodeling.

    • Maria Stahl Madsen
    • Marjoleine F. Broekema
    • Eric Kalkhoven
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-19
  • Mammalian genomes encode tens of thousands of ncRNAs that have important roles in regulation of gene expression and chromatin organization. Here, the authors present RADICLseq to map RNA-chromatin interactions in intact nuclei to shed light on these fine-tuned processes.

    • Alessandro Bonetti
    • Federico Agostini
    • Piero Carninci
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • In mice, the pseudoautosomal region of the sex chromosomes undergoes a dynamic structural rearrangement to promote a high rate of DNA double-strand breaks and to ensure X–Y recombination.

    • Laurent Acquaviva
    • Michiel Boekhout
    • Scott Keeney
    Research
    Nature
    Volume: 582, P: 426-431
  • The transcription-coupled repair pathway removes transcription-blocking DNA lesions, but how transcription is restored following DNA repair is not clear. Here the authors reveal that the PAF1 complex, while dispensable for the repair process, restores transcription after DNA damage.

    • Diana van den Heuvel
    • Cornelia G. Spruijt
    • Martijn S. Luijsterburg
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-19
  • Lactate racemase is an enzyme that interconverts the L and D isomers of the common metabolite lactate. Here, the authors show that lactate racemase represents a new type of nickel-dependent enzyme, which is activated by accessory proteins that are widespread among prokaryotic microbes.

    • Benoît Desguin
    • Philippe Goffin
    • Pascal Hols
    Research
    Nature Communications
    Volume: 5, P: 1-12
  • The state of charge, mechanical strain and temperature within lithium-ion 18650 cells operated at high rates are characterized and operando temperature rise is observed to be due to heat accumulation, strongly influenced by cell design and charging protocol.

    • T. M. M. Heenan
    • I. Mombrini
    • P. R. Shearing
    Research
    Nature
    Volume: 617, P: 507-512
  • Iatrogenic injury of the ureters is a feared complication of laparoscopic abdominal surgery. Here the authors present the NIR fluorophore ZW800-1 as an intraoperative imaging agent for ureter mapping, showing its safety, pharmacokinetic properties, and efficacy in healthy volunteers and patients undergoing abdominopelvic surgery.

    • Kim S. de Valk
    • Henricus J. Handgraaf
    • Alexander L. Vahrmeijer
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-6
  • A large genome-wide association study of more than 5 million individuals reveals that 12,111 single-nucleotide polymorphisms account for nearly all the heritability of height attributable to common genetic variants.

    • Loïc Yengo
    • Sailaja Vedantam
    • Joel N. Hirschhorn
    ResearchOpen Access
    Nature
    Volume: 610, P: 704-712
  • The effect of nanocrystal structure on electronic properties is of considerable interest for optoelectronic devices. Here, Evers et al. study the charge transport in two-dimensional percolative networks of PbSe and find excellent terahertz mobility of charge carriers.

    • Wiel H. Evers
    • Juleon M. Schins
    • Laurens D. A. Siebbeles
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-8
  • Application of SuRE reporter technology to survey the effect of 5.9 million SNPs in the human genome on enhancer and promoter activity identifies over 30,000 SNPs that alter the activity of putative regulatory elements.

    • Joris van Arensbergen
    • Ludo Pagie
    • Bas van Steensel
    Research
    Nature Genetics
    Volume: 51, P: 1160-1169
  • The S-locus inhibitor (Sli) gene could allow potato breeding by facilitating production of diploid inbred lines. Here the authors show that Sli encodes an F-box protein with a promoter insertion enhancing expression in pollen can overcome pollen rejection in the styles of diploid potato.

    • Ernst-Jan Eggers
    • Ate van der Burgt
    • Pim Lindhout
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • A case–control study investigating the causes of recent cases of acute hepatitis of unknown aetiology in 32 children identifies an association between adeno-associated virus infection and host genetics in disease susceptibility.

    • Antonia Ho
    • Richard Orton
    • Emma C. Thomson
    Research
    Nature
    Volume: 617, P: 555-563
  • HIV-1 replication requires proviral production of full-length transcripts. Geijtenbeek and colleagues show that early Tat-independent HIV-1 replication coopts innate receptor signaling by DC-SIGN and TLR8 to promote RNA polymerase II elongation complexes at long terminal repeats.

    • Sonja I Gringhuis
    • Michiel van der Vlist
    • Teunis B H Geijtenbeek
    Research
    Nature Immunology
    Volume: 11, P: 419-426
  • Miniaturized ceramic fuel cells are attractive for portable devices, but performance should be optimized. Here the authors report a micro-monolithic ceramic cell design for a tubular solid oxide fuel cell containing a multi-channel anode support with enhanced power density and stable operation.

    • Tao Li
    • Thomas M. M. Heenan
    • Kang Li
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • Iron-based catalysts are desirable for Fischer–Tropsch synthesis but are often hindered by deactivation arising from sintering or phase change. Here, the authors report the metal-organic framework-mediated synthesis of dispersed iron carbide catalysts and demonstrate their activity and stability.

    • Vera P. Santos
    • Tim A. Wezendonk
    • Jorge Gascon
    Research
    Nature Communications
    Volume: 6, P: 1-8
  • Determining the nanostructure within complex composites may lead to greater understanding of their properties. Here, the authors demonstrate the application of X-ray atomic pair distribution function computed tomography to resolve the physicochemical properties of palladium nanoparticles on an alumina catalyst.

    • Simon D. M. Jacques
    • Marco Di Michiel
    • Simon J. L. Billinge
    Research
    Nature Communications
    Volume: 4, P: 1-7
  • Reduced expression of DICER—responsible for the processing of microRNA precursors—was previously linked to poor clinical outcomes in cancer patients. Here, the authors uncover an epigenetic mechanism by which hypoxia suppresses DICER expression and deregulates the miR-200-Zeb1 circuit in breast cancer to promote the tumour phenotype.

    • Twan van den Beucken
    • Elizabeth Koch
    • Bradly G. Wouters
    Research
    Nature Communications
    Volume: 5, P: 1-13
  • Male túngara frogs living in urban environments have adjusted their mating calls in response to differing sexual and natural selection pressures. Males have more conspicuous calls, experience lower predation risk and attract more females than forest-dwelling conspecifics.

    • Wouter Halfwerk
    • Michiel Blaas
    • Jacintha Ellers
    Research
    Nature Ecology & Evolution
    Volume: 3, P: 374-380
  • Histone H3 lysine 14 is propionylated and butyrylated in vivo in a metabolic-state-dependent manner and these modifications promote high levels of transcription.

    • Adam F Kebede
    • Anna Nieborak
    • Robert Schneider
    Research
    Nature Structural & Molecular Biology
    Volume: 24, P: 1048-1056
  • A time-resolved high-resolution map of human cardiac remodelling after myocardial infarction, integrating single-cell transcriptomic, chromatin accessibility and spatial transcriptomic data, provides a valuable resource for the field.

    • Christoph Kuppe
    • Ricardo O. Ramirez Flores
    • Rafael Kramann
    Research
    Nature
    Volume: 608, P: 766-777
  • Surface-deformation imaging, molecular-fracture sensors and modelling reveal that plant-pathogenic Phytophthora slice through the plant surface during host invasion. The underlying mechanism resembles cutting with a sharp knife and is termed naifu invasion.

    • Jochem Bronkhorst
    • Michiel Kasteel
    • Joris Sprakel
    Research
    Nature Microbiology
    Volume: 6, P: 1000-1006
  • Multi-scale chemical imaging holds the potential to revolutionize our understanding of the relationships between structure and functionality in complex catalytic materials. Here the authors report the results from the first 5D tomographic diffraction imaging experiment of a complex Ni – Pd/ CeO2 – ZrO2/ Al2O3 catalyst used for methane reforming.

    • A. Vamvakeros
    • S. D. M. Jacques
    • A. M. Beale
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477