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Showing 1–50 of 284 results
Advanced filters: Author: N D Beckmann Clear advanced filters
  • CRISPR-Cas9 technology holds the potential to treat a wide spectrum of genetic diseases. Here, the authors describe a modular platform for extracellular vesicle-based Cas9 delivery, using MS2-based RNA-binding domains and UV-cleavable linkers, suitable for various Cas9-based moieties.

    • Omnia M. Elsharkasy
    • Charlotte V. Hegeman
    • Olivier G. de Jong
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • In bacteria, many small regulatory RNAs (sRNAs) associate with the RNA chaperone Hfq to modulate gene expression at the post-transcriptional level. Here, the authors identify global Hfq-mediated RNA-RNA interactions in Caulobacter crescentus and uncover a sponge RNA that antagonizes four homologous sRNAs in response to carbon starvation.

    • Laura N. Vogt
    • Manuel Velasco Gomariz
    • Kathrin S. Fröhlich
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • A highly potent and selective small-molecule catalytic inhibitor of the protein lysine methyltransferase NSD2 shows therapeutic efficacy in preclinical models of KRAS-driven pancreatic cancer and lung cancer.

    • Jinho Jeong
    • Simone Hausmann
    • Or Gozani
    Research
    Nature
    Volume: 649, P: 205-215
  • Bio‐based compounds often suffer from high production cost and low performance when used to synthesise macromolecules. Here the authors show the conversion of (+)‐3‐ carene, a by‐product of the cellulose industry, into its ε‐lactams and then to polyamides with high‐performance thermal properties.

    • Paul N. Stockmann
    • Daniel Van Opdenbosch
    • Volker Sieber
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • BSEP (ABCB11) is expressed in hepatocytes and extrudes bile salts into the canaliculi of the liver. Here, authors report cryo-EM structures of BSEP providing structural and functional insight into the mechanism of bile salt extrusion and small-molecule inhibition.

    • Hongtao Liu
    • Rossitza N. Irobalieva
    • Kaspar P. Locher
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • Infection studies on highly pathogenic avian influenza virus clade 2.3.4.4b H5N1 on calves and lactating cows indicate that transmission occurs primarily via milk and milking procedures rather than respiratory routes.

    • Nico Joel Halwe
    • Konner Cool
    • Juergen A. Richt
    ResearchOpen Access
    Nature
    Volume: 637, P: 903-912
  • Mammalian genomes are scattered with repetitive sequences, but their biology remains largely elusive. Here, the authors show that transcription can initiate from short tandem repetitive sequences, and that genetic variants linked to human diseases are preferentially found at repeats with high transcription initiation level.

    • Mathys Grapotte
    • Manu Saraswat
    • Charles-Henri Lecellier
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-18
  • Loss of epigenetic information is a hallmark of cellular aging. Here, authors examine changes in the epigenetic landscape at three stages of Huntington neurodegenerative disease (HD) in two mouse models and demonstrate accelerated de-repression of developmental genes in HD striatal neurons.

    • Baptiste Brulé
    • Rafael Alcalá-Vida
    • Karine Merienne
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Molecular mechanisms regulating optimal myelin geometry are only partially understood. Here authors show that peripheral myelin growth is orchestrated by the Crb3/Hippo/YAP pathway, and that defects in YAP activation may underlie peripheral neuropathies caused by shorter myelin.

    • Ruani N. Fernando
    • Laurent Cotter
    • Nicolas Tricaud
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-14
  • Subramanian et al. show that the secreted Legionella protein SidI is a tRNA mimic and glycosyltransferase. SidI inhibits host cell translation by mannosylating ribosomes to induce ribosome collisions and trigger the ribotoxic stress response.

    • Advait Subramanian
    • Lan Wang
    • Shaeri Mukherjee
    Research
    Nature Cell Biology
    Volume: 25, P: 1600-1615
  • High-resolution cryo-EM density maps are used to present the structures of Drosophila and human 80S ribosomes in complex with eEF2, E-site transfer RNA and Stm1-like proteins, and reveal the presence of two additional structural layers in the ribosomes of metazoan eukaryotes.

    • Andreas M. Anger
    • Jean-Paul Armache
    • Roland Beckmann
    Research
    Nature
    Volume: 497, P: 80-85
  • Previous studies argued that nascent polypeptide chains can form secondary structure in the ribosome exit tunnel despite spatial constraints. Using single-particle cryo-EM reconstructions of eukaryotic ribosomes carrying nascent chains with high helical propensity, density consistent with helix formation is now observed in the exit tunnel as are interactions with tunnel proteins.

    • Shashi Bhushan
    • Marco Gartmann
    • Roland Beckmann
    Research
    Nature Structural & Molecular Biology
    Volume: 17, P: 313-317
  • The de novo design of a pair of complementary peptides, one basic for cell penetration and target binding and one acidic that can be fused to proteins of interest, provides an approach for delivery into mammalian cells and subcellular targeting.

    • Guto G. Rhys
    • Jessica A. Cross
    • Derek N. Woolfson
    Research
    Nature Chemical Biology
    Volume: 18, P: 999-1004
  • The cyanobacterial circadian clock typically includes a standard oscillator consisting of proteins KaiA, KaiB and KaiC, but some cyanobacteria have additional homologous proteins of unclear function. Here, the authors show that a KaiABC homolog system contributes, together with the canonical oscillator, to the control of circadian rhythms in the model cyanobacterium Synechocystis sp. PCC 6803.

    • Christin Köbler
    • Nicolas M. Schmelling
    • Annegret Wilde
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-20
  • Differential sensing aims to mimic senses such as taste and smell through the use of synthetic receptors. Here, the authors show that arrays of de novo designed peptide assemblies can be used as sensor components to distinguish various analytes and complex mixtures.

    • William M. Dawson
    • Kathryn L. Shelley
    • Derek N. Woolfson
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • In this prospective cohort study, authors follow 328 households in Germany with at least one confirmed SARS-CoV-2 infection and find that children are more likely to seroconvert without symptoms and have higher specific antibody levels that persist longer than in adults.

    • Hanna Renk
    • Alex Dulovic
    • Roland Elling
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-11
  • The N-end rule pathway targets substrate proteins for proteasomal degradation. Here, Whiteet al. show that ArabidopsisPLANT CYSTEINE OXIDASEs show dioxygenase activity producing Cys-sulfinic acid at the N-terminus of target proteins, which then act as direct substrates for arginyl transferase.

    • Mark D. White
    • Maria Klecker
    • Emily Flashman
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-9
  • The mechanical microenvironment influences stem cell pluripotency. Here, the authors culture stem cells in microgels with controlled volumetric confinement and identify Plakoglobin as a mechanoresponsive regulator of pluripotency in mouse and human.

    • Timo N. Kohler
    • Joachim De Jonghe
    • Florian Hollfelder
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19
  • Nucleocytoplasmic Large DNA Viruses (NCLDV) that infect algae encode two distinct families of microbial rhodopsins. Here, the authors characterise two proteins form the viral rhodopsin group 1 OLPVR1 and VirChR1, present the 1.4 Å crystal structure of OLPVR1 and show that viral rhodopsins 1 are light-gated cation channels.

    • Dmitrii Zabelskii
    • Alexey Alekseev
    • Valentin Gordeliy
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • A multi-ancestry genome-wide association study for age at menarche followed by fine mapping and downstream analysis implicates 665 pubertal timing genes, such as the G-protein-coupled receptor 83 (GPR83) and other genes expressed in the ovaries involved in the DNA damage response.

    • Katherine A. Kentistou
    • Lena R. Kaisinger
    • Ken K. Ong
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 1397-1411
  • Planarians are model systems for stem cells and regeneration. This study provides new genome assemblies of the model species S. mediterranea and 3 relatives and uses comparative genomics of planarians to reveal that synteny is not an evolutionary constraint in flatworm genome evolution.

    • Mario Ivanković
    • Jeremias N. Brand
    • Jochen C. Rink
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Oestrogen negative breast cancer is associated with a poor prognosis. In this study, the authors perform a meta-analysis of 11 breast cancer genome-wide association studies and identify four new loci associated with oestrogen negative breast cancer risk. These findings may aid in stratifying patients in the clinic.

    • Fergus J. Couch
    • Karoline B. Kuchenbaecker
    • Antonis C. Antoniou
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-13
  • The sheep and goat were domesticated ~10,500 years ago in the same region of the Middle-East. Here, Alberto et al compare the genomes of wild Asiatic mouflon and Bezoar ibex with that of domestics from local, traditional and improved breeds and find common targets of selection related to domestication and improvement in sheep and goats.

    • Florian J. Alberto
    • Frédéric Boyer
    • François Pompanon
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-9
  • Analyses reveal a previously undescribed transmembrane protein fold in the endoplasmic reticulum-based glucosyltransferase ALG6 and provide a structural basis for understanding the glucose transfer mechanism.

    • Joël S. Bloch
    • Giorgio Pesciullesi
    • Kaspar P. Locher
    Research
    Nature
    Volume: 579, P: 443-447
  • Destici, Zhu, et al. identify human-specific cis-regulatory elements (CREs) through a comparative epigenomic analysis of human and mouse cardiomyocytes at early stage of development and show that these CREs could contribute to species-specific cardiac features. Human-specific enhancers were particularly enriched in SNPs associated with human-specific traits (such as increased heart resting rate, atrial fibrillation and QRS duration), and the acquisition of human-specific enhancers could expand the functionality of the conserved transcriptional regulator ZIC3 by modifying its spatio-temporal expression.

    • Eugin Destici
    • Fugui Zhu
    • Neil C. Chi
    Research
    Nature Cardiovascular Research
    Volume: 1, P: 830-843
  • Tryptophan C-mannosyltransferase (CMT) enzymes append a mannose to the first tryptophan of select sequences, which is important for the trafficking, folding and function of secretory and transmembrane proteins involved in cellular communication processes. A study reveals the structure, mode of peptide recognition and catalytic mechanism for the eukaryotic C-mannosyltransferase DPY19.

    • Joël S. Bloch
    • Alan John
    • Kaspar P. Locher
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 19, P: 575-584
  • Understanding the molecular basis of leukaemia predisposition is essential for intervention. The authors here investigate germline genetic leukaemia predisposition by studying Shwachman-Diamond syndrome and report compensatory inactivating mutations in EIF6 and transforming biallelic TP53 alterations.

    • Alyssa L. Kennedy
    • Kasiani C. Myers
    • R. Coleman Lindsley
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • John Chambers and colleagues identify common variants at four loci associated with serum creatinine levels, a marker of kidney function. Their findings provide insight into the pathways underlying susceptibility to chronic kidney disease.

    • John C Chambers
    • Weihua Zhang
    • Jaspal S Kooner
    Research
    Nature Genetics
    Volume: 42, P: 373-375
  • Immune checkpoint blockade is a promising approach to treat lung cancer, however, immune related adverse events hold back success in some patients. Here authors show that regulatory B cells fail to limit self-reactive T cells in these patients, and B cell phenotyping prior treatment may identify those at risk for these unfavourable outcomes.

    • Akshay J. Patel
    • Zena N. Willsmore
    • Gary W. Middleton
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16
  • The neurotransmitter transporter SERT counter transport K+ to transport serotonin. Here the authors show that the activity of the prokaryotic orthologue LeuT is also modulated by this cation, suggesting a general regulatory role for K+on neutrotrasmitter:sodium symporters function.

    • Christian B. Billesbølle
    • Jonas S. Mortensen
    • Claus J. Loland
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-12
  • The pyruvate dehydrogenase complex (PDC) is a multienzyme complex connecting glycolysis to mitochondrial oxidation of pyruvate. Cryo-EM analysis of PDC from Neurospora crassa reveals localization of fungi-specific protein X (PX) and confirms that it functions like the mammalian E3BP, recruiting the E3 component of PDC.

    • B. O. Forsberg
    • S. Aibara
    • E. Lindahl
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Similarities in cancers can be studied to interrogate their etiology. Here, the authors use genome-wide association study summary statistics from six cancer types based on 296,215 cases and 301,319 controls of European ancestry, showing that solid tumours arising from different tissues share a degree of common germline genetic basis.

    • Xia Jiang
    • Hilary K. Finucane
    • Sara Lindström
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-23
  • Timothy Frayling, Joel Hirschhorn, Peter Visscher and colleagues report a meta-analysis of genome-wide association studies for adult height in 253,288 individuals. They identify 697 variants in 423 loci significantly associated with adult height and find that these variants cluster in pathways involved in growth and together explain one-fifth of the heritability for this trait.

    • Andrew R Wood
    • Tonu Esko
    • Timothy M Frayling
    Research
    Nature Genetics
    Volume: 46, P: 1173-1186
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477