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Dysregulation of homeostatic cytokine receptors drives prolonged T cell activation following acute SARS-CoV-2 infection in humans

Acute viral infections induce the activation and expansion of virus-specific T cells which eventually abate, but in some situations can persist. Here the authors show a dysregulation of homeostatic cytokine receptors in patients with prolonged T cell activation following acute SARS-CoV-2 infection

Laura Ceglarek
Patrick Taeschler
Onur Boyman
ResearchOpen Access27 Nov 2025
Nature Communications

Volume: 16, P: 1-17
Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy

The bone marrow microenvironment modulates haematopoiesis, stem cell maintenance and differentiation. Here, the authors use 3D microscopy to map the topography of haematopoietic stem cell niche stromal components.

Alvaro Gomariz
Patrick M. Helbling
César Nombela-Arrieta
ResearchOpen Access28 Jun 2018
Nature Communications

Volume: 9, P: 1-15
Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy

Deep learning has revolutionized image analysis, but applying it to voluminous and multimodal images can be challenging. The authors propose a neural network approach with a modality sampling strategy and an attention module for segmentation in fluorescence microscopy images.

Alvaro Gomariz
Tiziano Portenier
Orcun Goksel
Research09 Aug 2021
Nature Machine Intelligence

Volume: 3, P: 799-811
Immunoglobulin signature predicts risk of post-acute COVID-19 syndrome

Studying a prospective cohort, the authors develop and validate a predictive score for post-acute COVID-19 syndrome, also known as long-COVID. This score relies on an immunoglobulin signature and is independent of timepoint of blood sampling.

Carlo Cervia
Yves Zurbuchen
Onur Boyman
ResearchOpen Access25 Jan 2022
Nature Communications

Volume: 13, P: 1-12
Platelet GPIbα is a mediator and potential interventional target for NASH and subsequent liver cancer

Blockade of intrahepatic accumulation and function of platelets represents a potential approach to treat non-alcoholic steatohepatitis (NASH) and prevent subsequent progression to hepatocellular carcinoma

Mohsen Malehmir
Dominik Pfister
Mathias Heikenwalder
Research01 Apr 2019
Nature Medicine

Volume: 25, P: 641-655
Controlled flight of a microrobot powered by soft artificial muscles

Heavier-than-air insect-scale aerial robots powered by soft artificial muscles can hover and also recover from in-flight collisions, illustrating the potential for developing next-generation agile soft robots.

Yufeng Chen
Huichan Zhao
Robert J. Wood
Research04 Nov 2019
Nature

Volume: 575, P: 324-329
Human memory B cells show plasticity and adopt multiple fates upon recall response to SARS-CoV-2

Boyman and colleagues perform phenotypic and B cell receptor sequencing analysis of memory B cell subsets in severe acute respiratory syndrome coronavirus 2-infected and subsequently vaccinated individuals up to 1 year post-infection to show that single memory B cell clones can adopt different trajectories.

Yves Zurbuchen
Jan Michler
Onur Boyman
ResearchOpen Access27 Apr 2023
Nature Immunology

Volume: 24, P: 955-965
Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization

Baccin, Al-Sabah, Velten et al. use single-cell and spatially resolved transcriptomics to map the cellular, molecular and spatial organization of the endosteal, sinusoidal and arteriolar bone marrow niches.

Chiara Baccin
Jude Al-Sabah
Simon Haas
Research23 Dec 2019
Nature Cell Biology

Volume: 22, P: 38-48
Microbial network disturbances in relapsing refractory Crohn’s disease

A disturbed microbial network characterizes relapsing refractory Crohn’s disease and antedates disease recurrence after surgical removal of the active disease segment.

Bahtiyar Yilmaz
Pascal Juillerat
Andrew J. Macpherson
Research21 Jan 2019
Nature Medicine

Volume: 25, P: 323-336
Signature of long-lived memory CD8⁺ T cells in acute SARS-CoV-2 infection

Evidence of a transcriptional signature that marks precursors of long-lived CD8⁺ memory T cells in SARS-CoV-2 infection.

Sarah Adamo
Jan Michler
Onur Boyman
ResearchOpen Access07 Dec 2021
Nature

Volume: 602, P: 148-155
Author Correction: Platelet GPIbα is a mediator and potential interventional target for NASH and subsequent liver cancer

Mohsen Malehmir
Dominik Pfister
Mathias Heikenwalder
Amendments and Corrections18 Feb 2022
Nature Medicine

Volume: 28, P: 600
Interactive effects of ozone depletion and vertical mixing on photosynthesis of Antarctic phytoplankton

Patrick J. Neale
Richard F. Davis
John J. Cullen
Research09 Apr 1998
Nature

Volume: 392, P: 585-589
Publisher Correction: Microbial network disturbances in relapsing refractory Crohn’s disease

Bahtiyar Yilmaz
Pascal Juillerat
Andrew J. Macpherson
Amendments and Corrections07 Mar 2019
Nature Medicine

Volume: 25, P: 701
In vivo single-cell labeling by confined primed conversion

Primed conversion of proteins such as Dendra2 confines photoconversion to a limited 3Dvolume through a sequential absorption process relying on illumination with two separate low-intensity lasers and enables precise targeting of single cells.

William P Dempsey
Lada Georgieva
Periklis Pantazis
Research18 May 2015
Nature Methods

Volume: 12, P: 645-648
Loss of the branched-chain amino acid transporter CD98hc alters the development of colonic macrophages in mice

CD98hc in macrophages attenuates the severity of colitis. This change in the macrophage development is associated with increased expression of apoptotic genes, suggesting that CD98hc maintains the gut homeostasis by ensuring the development of gut macrophages.

Philipp Wuggenig
Berna Kaya
Jan Hendrik Niess
ResearchOpen Access18 Mar 2020
Communications Biology

Volume: 3, P: 1-19

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Dysregulation of homeostatic cytokine receptors drives prolonged T cell activation following acute SARS-CoV-2 infection in humans

Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy

Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy

Immunoglobulin signature predicts risk of post-acute COVID-19 syndrome

Platelet GPIbα is a mediator and potential interventional target for NASH and subsequent liver cancer

Controlled flight of a microrobot powered by soft artificial muscles

Human memory B cells show plasticity and adopt multiple fates upon recall response to SARS-CoV-2

Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization

Microbial network disturbances in relapsing refractory Crohn’s disease

Signature of long-lived memory CD8⁺ T cells in acute SARS-CoV-2 infection

Author Correction: Platelet GPIbα is a mediator and potential interventional target for NASH and subsequent liver cancer

Interactive effects of ozone depletion and vertical mixing on photosynthesis of Antarctic phytoplankton

Publisher Correction: Microbial network disturbances in relapsing refractory Crohn’s disease

In vivo single-cell labeling by confined primed conversion

Loss of the branched-chain amino acid transporter CD98hc alters the development of colonic macrophages in mice

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