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Showing 1–6 of 6 results
Advanced filters: Author: Santrupti Nerli Clear advanced filters

  • Structure prediction of peptide/HLA (pHLA) complexes has been mired by the inability to accurately model the middle of the peptide. Here, the authors present a curated database of pHLA structures (HLA3DB) and identify discrete peptide backbone conformations that are used for high fidelity modelling.

    • Sagar Gupta
    • Santrupti Nerli
    • Nikolaos G. Sgourakis
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13

  • Here, the authors present Methyl Assignments Using Satisfiability (MAUS), a method for the assignment of methyl groups using raw NOE data. They use eight proteins in the 10–45 kDa size range as test cases and show that MAUS yields 100% accurate assignments at high completeness levels.

    • Santrupti Nerli
    • Viviane S. De Paula
    • Nikolaos G. Sgourakis
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13

  • Baker, Marcos and colleagues analyze β-arches (loops connecting unpaired β-strands) and derive rules used for de novo design of a hyperthermostable jellyroll structure, with eight antiparallel β-strands forming double-stranded β-helices.

    • Enrique Marcos
    • Tamuka M. Chidyausiku
    • David Baker
    Research
    Nature Structural & Molecular Biology
    Volume: 25, P: 1028-1034

  • Further automation of NMR structure determination is needed to increase the throughput and accessibility of this method. Here the authors present 4D-CHAINS/autoNOE-Rosetta, a complete pipeline that allows rapid and fully automated structure determination from two highly complementary NMR datasets.

    • Thomas Evangelidis
    • Santrupti Nerli
    • Konstantinos Tripsianes
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-13

  • The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptation of our popular genome-browser visualization tool for this virus, containing many annotation tracks and new features, including conservation with similar viruses, immune epitopes, RT–PCR and sequencing primers and CRISPR guides. We invite all investigators to contribute to this resource to accelerate research and development activities globally.

    • Jason D. Fernandes
    • Angie S. Hinrichs
    • Maximilian Haeussler
    Comments & Opinion
    Nature Genetics
    Volume: 52, P: 991-998