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Showing 1–14 of 14 results
Advanced filters: Author: Sudha Chakrapani Clear advanced filters
  • Glycine receptors (GlyR) are a critical postsynaptic component of spinal neurons. Here, the auhtors present cryo-EM structures of a heteromeric GlyR in the presence of an antagonist, agonist and agonist with a positive allosteric modulator.

    • Eric Gibbs
    • Emily Klemm
    • Sudha Chakrapani
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Drugs with partial activity at the serotonin 3 receptors (5-HT3R) are suited to normalize serotonin response in treating irritable bowel syndrome. Felt et al. demonstrate the mechanism of partial agonism in 5-HT3AR using cryo-EM.

    • Kevin Felt
    • Madeleine Stauffer
    • Sudha Chakrapani
    Research
    Nature Structural & Molecular Biology
    Volume: 31, P: 598-609
  • Glycinergic synapses play a central role in motor control and pain processing in the central nervous system. Here, authors present cryo-EM structures of the full-length glycine receptors (GlyRs) reconstituted into lipid nanodiscs in the unliganded, glycine-bound and allosteric modulator-bound conformations and reveal global conformational changes underlying GlyR channel gating and modulation.

    • Arvind Kumar
    • Sandip Basak
    • Sudha Chakrapani
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Serotonin receptors (5-HT3R) belong to the pentameric ligand-gated ion channel superfamily and mediate excitatory postsynaptic signaling. Here the authors present the high-resolution cryo-EM structure of 5-HT3AR bound with the competitive antagonist granisetron and further validate the granisetron-binding mode with electrophysiology measurements and MD simulations.

    • Sandip Basak
    • Yvonne Gicheru
    • Sudha Chakrapani
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • Serotonin receptor (5-HT3AR), a pentameric ligand-gated ion channel, regulates numerous gastrointestinal functions. Here the authors provide a cryo-electron microscopic structure from the full-length 5-HT3AR in the apo-state which corresponds to a resting conformation of the channel.

    • Sandip Basak
    • Yvonne Gicheru
    • Sudha Chakrapani
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-10
  • The K+ channels can display three distinct gating modes. The molecular basis for two of these modes (low open probability and flickery) are now examined by a combination of single-channel recording, crystallography and modeling of mutants in Glu71, revealing that changes in ion and water occupancy in and around the selectivity filter determine modal gating.

    • Sudha Chakrapani
    • Julio F Cordero-Morales
    • Eduardo Perozo
    Research
    Nature Structural & Molecular Biology
    Volume: 18, P: 67-74
  • A series of long molecular dynamics simulations shows that the K+ channel is sterically locked in the inactive conformation by buried water molecules bound behind the selectivity filter; a kinetic model deduced from the simulations shows how releasing the buried waters can elongate the timescale of the recovery period, and this hypothesis is confirmed using ‘wet’ biophysical experiments.

    • Jared Ostmeyer
    • Sudha Chakrapani
    • Benoît Roux
    Research
    Nature
    Volume: 501, P: 121-124
  • Recent structural and functional analyses of MthK, a prokaryotic Ca2+-activated K+ channel, suggest that the interplay between cytoplasmic Ca2+ and H+ concentrations determines the oligomeric stability of its associated RCK domain and thus controls activation gating. However, the discovery of a ligand-dependent desensitization process suggests that gating in these channels might be more complicated than originally envisioned.

    • Sudha Chakrapani
    • Eduardo Perozo
    News & Views
    Nature Structural & Molecular Biology
    Volume: 14, P: 180-182
  • Cryo-electron microscopy structures of the serotonin-bound 5-HT3A serotonin receptor show the receptor populating two distinct states, characterized by twisting in the extracellular and transmembrane domains relative to the apo state, which creates pathways for ion permeation.

    • Sandip Basak
    • Yvonne Gicheru
    • Sudha Chakrapani
    Research
    Nature
    Volume: 563, P: 270-274
  • Mitochondria defects caused by mutant huntingtin (mtHtt) have been implicated in Huntington's disease. Here authors show that VCP binds to mtHtt on the mitochondria, and that treatment with a peptide that disrupts this interaction reduces the cellular and behavioural deficits in mouse models of HD.

    • Xing Guo
    • XiaoYan Sun
    • Xin Qi
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-17
  • The cryo-EM structure of the full-length TRPV5 channel in complex with inhibitor econazole reveals a domain-swapped architecture and provides insights into mechanisms of inhibition.

    • Taylor E. T. Hughes
    • David T. Lodowski
    • Vera Y. Moiseenkova-Bell
    Research
    Nature Structural & Molecular Biology
    Volume: 25, P: 53-60
  • K+ channels can convert between conductive and non-conductive forms through mechanisms that range from flicker transitions (which occur in microseconds) to C-type inactivation (which occurs on millisecond to second timescales). Here, the mechanisms are revealed through which movements of the inner gate of the K+ channel KcsA trigger conformational changes at the selectivity filter, leading to the non-conductive C-type inactivated state.

    • Luis G. Cuello
    • Vishwanath Jogini
    • Eduardo Perozo
    Research
    Nature
    Volume: 466, P: 272-275