Nature Search

Portal Venous and Aortic Glucose and Lactate Changes in a Chronically Catheterized Rat

Robert E Kimura
Timothy R LaPine
W Manford Gooch III
Research01 Feb 1988
Pediatric Research

Volume: 23, P: 235-240
Correction: Corrigendum: Performance comparison of benchtop high-throughput sequencing platforms

Nicholas J Loman
Raju V Misra
Mark J Pallen
Amendments and Corrections07 Jun 2012
Nature Biotechnology

Volume: 30, P: 562
Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

Nicholas A Feasey
James Hadfield
Nicholas R Thomson
Amendments and Corrections30 Mar 2017
Nature Genetics

Volume: 49, P: 651
In vivo biomolecular imaging of zebrafish embryos using confocal Raman spectroscopy

Raman spectroscopic imaging (RSI) can provide information on the chemical composition of a sample, but application to living organisms has lacked sufficient spatial resolution and signal strength. Here the authors apply confocal RSI to whole-mount zebrafish embryos to distinguish different infectious bacteria and to living zebrafish embryos to monitor the wound healing process.

Håkon Høgset
Conor C. Horgan
Molly M. Stevens
ResearchOpen Access02 Dec 2020
Nature Communications

Volume: 11, P: 1-12
Phylogenomic approaches to determine the zoonotic potential of Shiga toxin-producing Escherichia coli (STEC) isolated from Zambian dairy cattle

Geoffrey Mainda
Nadejda Lupolova
David L. Gally
ResearchOpen Access25 May 2016
Scientific Reports

Volume: 6, P: 1-8
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Whole genome sequencing is increasingly being adopted for Shigella sonnei outbreak investigation and surveillance, but there is no global classification standard. Here, the authors develop and validate a genomic framework implemented using open-source software, and demonstrate its application using surveillance data.

Jane Hawkey
Kalani Paranagama
Kathryn E. Holt
ResearchOpen Access11 May 2021
Nature Communications

Volume: 12, P: 1-12
Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

Antimicrobial resistance (AMR) in Shigella species is a public health concern. Here, Baker et al. show how horizontal transfer of an AMR plasmid among Shigella species contributes to epidemics in men who have sex with men in England.

Kate S. Baker
Timothy J. Dallman
Nicholas Thomson
ResearchOpen Access13 Apr 2018
Nature Communications

Volume: 9, P: 1-10
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

Nicholas Feasey and colleagues report whole-genome sequence analysis of 675 isolates of Salmonella enterica serovar Enteritidis from 45 countries. They find evidence for a global epidemic clade associated with enterocolitis and two novel clades restricted to distinct regions of Africa and associated with invasive disease.

Nicholas A Feasey
James Hadfield
Nicholas R Thomson
Research22 Aug 2016
Nature Genetics

Volume: 48, P: 1211-1217
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

Phylogenetic analysis defines the population and transmission structure of Listeria monocytogenes isolates and creates a global framework for epidemiological surveillance.Phylogenetic analysis defines the population and transmission structure of Listeria monocytogenes isolates and creates a global framework for epidemiological surveillance.

Alexandra Moura
Alexis Criscuolo
Sylvain Brisse
Research10 Oct 2016
Nature Microbiology

Volume: 2, P: 1-10
Performance comparison of benchtop high-throughput sequencing platforms

Small sequencing machines no bigger than a laser printer have many potential applications in diagnostics and public health. Loman et al. compare the quality, throughput and cost of instruments from Illumina, Roche and Life Technologies.

Nicholas J Loman
Raju V Misra
Mark J Pallen
Research22 Apr 2012
Nature Biotechnology

Volume: 30, P: 434-439
Microevolution of Campylobacter jejuni during long-term infection in an immunocompromised host

Clare R. Barker
Anaïs Painset
Timothy J. Dallman
ResearchOpen Access22 Jun 2020
Scientific Reports

Volume: 10, P: 1-11
AI is a viable alternative to high throughput screening: a 318-target study

Izhar Wallach
Denzil Bernard
Abraham Heifets
ResearchOpen Access02 Apr 2024
Scientific Reports

Volume: 14, P: 1-16
Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing

David R. Greig
Vivienne Do Nascimento
Claire Jenkins
ResearchOpen Access09 Mar 2024
Scientific Reports

Volume: 14, P: 1-12
Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential

Mark Kirkwood et al. take an epidemiological, genomic, phylogenetic, and experimental approach to assess the evolutionary origins and virulence of the U288 and ST34 isolates of Salmonella enterica in affecting livestock and potentially humans. Their results indicate that the molecular evolution of these isolates is associated with altered pathogenicity in pigs and reduced zoonotic potential of U288.

Mark Kirkwood
Prerna Vohra
Robert A. Kingsley
ResearchOpen Access23 Apr 2021
Communications Biology

Volume: 4, P: 1-15
Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance

Kate S. Baker
Timothy J. Dallman
Nicholas Thomson
ResearchOpen Access09 May 2018
Scientific Reports

Volume: 8, P: 1-8
Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

Nanna Munck
Pimlapas Leekitcharoenphon
Tine Hald
ResearchOpen Access03 Mar 2020
Scientific Data

Volume: 7, P: 1-12
Author Correction: AI is a viable alternative to high throughput screening: a 318-target study

Izhar Wallach
Denzil Bernard
Ellie Giles
Amendments and CorrectionsOpen Access16 Sept 2024
Scientific Reports

Volume: 14, P: 1-2

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Portal Venous and Aortic Glucose and Lactate Changes in a Chronically Catheterized Rat

Correction: Corrigendum: Performance comparison of benchtop high-throughput sequencing platforms

Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

In vivo biomolecular imaging of zebrafish embryos using confocal Raman spectroscopy

Phylogenomic approaches to determine the zoonotic potential of Shiga toxin-producing Escherichia coli (STEC) isolated from Zambian dairy cattle

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

Performance comparison of benchtop high-throughput sequencing platforms

Microevolution of Campylobacter jejuni during long-term infection in an immunocompromised host

AI is a viable alternative to high throughput screening: a 318-target study

Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing

Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential

Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

Author Correction: AI is a viable alternative to high throughput screening: a 318-target study

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