Abstract
Liver fibrosis is an over-reacted wound healing that becomes lethal in its late stage, when hepatic stellate cells (HSCs) trigger fibrotic response, proliferation of connective tissue and build-up of directional fibrous tissue bands (septa). Current in vitro models of liver fibrosis cannot reproduce liver lobule structure and the dynamic formation of septa at the same time, and the known biochemical cues underlying the progression of liver fibrosis cannot explain directional formation of fibrotic tissue. Here we report a microfabricated in vitro model that reproduces both the hexagonal liver lobule structure and the dynamic directionality of septa formation. By using collagen and primary mouse HSCs or human HSC lines, we found that tension was necessary to coordinate the cell migration that contributes to the band-like cell distribution and that HSCs sensed directional biophysical cues through liquid–liquid phase separation. This system allows the study of the biophysical interaction of HSCs and collagen during the formation of septa structures, and could be used to deepen our understanding of liver fibrosis progression.
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Data availability
All original data within this paper can be accessed through the corresponding author upon reasonable request. Source data are provided with this paper.
Code availability
The engineering files to prepare the PDMS stamp and the stretching systems, source code for building meshes to simulate collagen distribution after being contracted by cells (Rhino license required, with Grasshopper and Kangaroo Physics plugin), the calculator of collagen preparation formula, and the script to process raw migration data in batches are freely available on GitHub at https://github.com/LUKE-ZZ/nBME2025_Engineering_files (ref. 84) and https://github.com/LUKE-ZZ/nBME2025_Code (ref. 85). The description of these files is summarized in Supplementary Tables 2 and 3.
Material availability
Wild-type or genetically manipulated cell lines and plasmids in this paper can be shared upon reasonable request.
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Acknowledgements
We thank the Animal Core Facility and State Key Laboratory of Membrane Biology Imaging Branch at Tsinghua University for technical assistance; Tsinghua University Branch of China National Center for Protein Sciences (Beijing) and Tsinghua University Technology Center for Protein Research and Cell Function Analyzing Facility; Z. Cui for assisting in preparing the PDMS stamp; R. Lu and P. Zhao for helping during cell culture; and Z. Zeng from Fudan University for providing LX-2s. This work was financially supported by the National Natural Science Foundation of China (82125018, 32430058 and 82061148010 to Y.D.).
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Authors and Affiliations
Contributions
L.Z., Z.Y. and Y.D. conceived and designed the project. Y.D. is the principal investigator. L.Z., Z.S. and Z.Y. contributed to design and preparation of the PDMS stamp. L.Z. developed the method to prepare PDMS pillar array with laser engraving. Z.S. optimized the method to prepare the cover with lithography. Z.Y. designed the strategy to combine the pillar array and the cover to prepare the PDMS stamp. L.Z. prepared the in vitro models of liver fibrosis using LX-2s and primary mouse HSCs. L.Z. tested the effect of collagen of higher concentration on the in vitro model. L.Z. isolated primary mouse HSCs, characterized the activation on TCP and optimized the PDMS stamp for primary cells. L.Z. tested the longevity of the in vitro models constructed using LX-2s and primary mouse HSCs. L.Z. induced THP-1s to macrophages and co-cultured them with the in vitro model. L.Z. prepared pepsin-digested collagen and tested its effect in the in vitro model. L.Z. and X.Y. performed loss-of-function assays with laser cutting and molecular treatment. X.Y. established the method to estimate cell surface stress on the basis of FEA. L.Z., H.Y., Z.Z. and Z.S. established the method to prepare the stretching systems. L.Z. improved the stretching systems on the basis of H.Y.’s prototype. Z.Z. fine tuned the PMMA components. Z.Z. and Z.S. assisted in preparing the silicone chambers. Z.S. made the diagrams and videos to explain the assembly process of stretching systems. J.Z. and X.Y. processed the data of PIV tracking. Z.Z. and J.Z. processed the FFT data. X.Y. and L.Z. developed the methods for cutting live sections of fibrotic mouse livers and inducing incisions using trimmed razor blades. L.Z. and Z.L. performed experiments on optical tweezers for collagen stiffening in the stretching system. L.Z. performed experiments of optical tweezers of collagen stiffening in the in vitro models of LX-2s and primary HSCs and processed the data. L.Z. characterized cell migration of LX-2s and primary HSCs on strained collagen and Y.N. developed the MATLAB file to analyse the migration trends in batches. L.Z. recorded the time-lapse video of trapped quiescent primary HSCs. L.Z., Yuying Zhang, L.D., X.Y., J.Z. and J.H. constructed the overexpression plasmid of LIMD1-turboGFP. Y.W. and C.W. provided the plasmids to generate the functional knockout line of LIMD1. L.Z. performed the FRAP assay and analysed the data. Y.L. assisted in lentivirus packaging and cell labelling. Z.W. assisted in data processing. L.Z., Yan Zhang and C.L. optimized the methods of isolation of primary mouse HSCs. L.Z., Z.S. and Y.D. drafted and revised the paper.
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Extended data
Extended Data Fig. 2 The methods to prepare the PDMS stamp for the in vitro liver fibrosis model with the hexagonal liver lobule structure.
Key results are included in Fig. 2m. a, The blueprint of the PMMA (polymethyl methacrylate) mould with thin holes (A1). b, Preparation of the solid portal pillar (A2) by casting A1 with PDMS. c, The blueprint of the PMMA mould with thick holes (A3). d, Preparation of the hollow portal pillar (A4) by aligning A2 with A3, and casting with PDMS. e, The photomask (B1). f, Preparation of the photoresist pillar (B2) by lithography on glass substrate. g, Preparation of the PDMS pit (B3) by casting B2 with PDMS. h, Preparation of the PDMS pillar (B4) by casting B3 with PDMS. i, Preparation of the PDMS cover with through holes (B5) by smearing PDMS onto portal pillar tip of B4, crosslinking with PDMS substrate, and casting with PDMS. j, Preparation of the PDMS stamp (C) by aligning A4 with B5, and casting with PDMS. ‘P’ and ‘C’ represent the micro-structure corresponding to portal and central area in the in vitro model of liver fibrosis. j is partially created with BioRender.com. Engineering files of a, c and e can be accessed with the link in Supplementary Table 2.
Extended Data Fig. 3 Long-term culture of the in vitro micro-tissue model of liver fibrosis constructed with LX-2s.
a, After 6-day culture. Scale bar, 500 μm. Total, the whole in vitro model of liver fibrosis. Local, one liver lobule. The experiment in a was repeated 3 times independently with similar results.
Extended Data Fig. 4 Long-term culture of the in vitro micro-tissue model of liver fibrosis constructed with primary mouse hepatic stellate cells.
a, After 12-day culture. Scale bar, 500 μm. Total, the whole in vitro model of liver fibrosis. Local, one liver lobule. The experiment was repeated 3 times independently with similar results.
Extended Data Fig. 5 Laser cut the in vitro model constructed with LX-2s vertically to the ‘portal to portal’ direction.
a, The shape change of the incision after cutting. Scale bar, 100 μm. b, The stacked incision borders. c, The aspect ratio of the incision. d, The diagram to explain why the dilation indicates tension in the ‘portal to portal’ direction. The video is Supplementary Video 6. Data in c (n= 5 biological replicates) are mean ± s.d. Statistical analysis in (c) was performed with the matched nonparametric Friedman test because the aspect ratio data were measured as a matched series from each individual sample. Exact P values are labeled.
Extended Data Fig. 6 Alive liver sections of mouse indicate tension in the center of ‘portal to portal’ direction.
a, The method to cut alive liver sections of a mouse and induce incisions. b, The shape change after loading an incision in the alive liver section. Scale bar, 200 μm. c, The stacked incision borders. d, The ratio of the width to the height of the incision. The experiment in b was repeated 3 times independently with similar results. Data in d (n= 3 biological replicates) are mean ± s.d. Statistical analysis in (d) was performed with the matched nonparametric Friedman test because the aspect ratio data were measured as a matched series from each individual sample. Exact P values are labeled. The video is Supplementary Video 5. a was created with BioRender.com.
Extended Data Fig. 7 The sections of the time-lapse video indicate that quiescent primary HSCs could be trapped around activated primary HSC clusters.
Red line, the migration track. Arrow, the trapped quiescent primary HSC. Scale bar, 100 μm. The video is Supplementary Video 7.
Extended Data Fig. 8 The potential mechanism of the cell migration speed trends on collagen of gradient strain48.
a, The four steps in the classic ‘motor-clutch’ model of cell migration. We focus on the release stage to explain the cell migration trends. b, The potential mechanism to explain why quiescent HSCs have the ‘increase and decrease’ trend of migration speed on collagen of gradient strain. c, The potential mechanism to explain why the migration speed of activated HSCs don’t change evidently on collagen of gradient strain.
Extended Data Fig. 9 The in vitro model of liver fibrosis constructed using activated LX-2s (LIMD1 KO) and quiescent WT LX-2s.
a, After 1-day culture. b, After 4-day culture. Total, the whole in vitro model of liver fibrosis. Local, one liver lobule. Scale bar, 1 mm. The experiments in a-b were repeated 3 times independently with similar results.
Extended Data Fig. 10 Migration tracks of quiescent and activated HSCs on collagen loaded with different strain.
a, Migration tracks of quiescent HSCs. b, Migration tracks of activated HSCs. θ, the average migration angel. The average migration angel of a cell that migrates randomly is close to 45∘, whereas the average migration angel of a cell that migrates ideally along the strain direction is 90∘. How migration speed and average migration angel are calculated from time-lapse videos is explained in Supplementary Fig. 12.
Supplementary information
Supplementary Information
Supplementary Notes 1–8, Figs. 1–20 and Tables 1–9.
Supplementary Video 1
The stretching system compatible with optical tweezers (Fig. 5a) can sustain up to ~60% strain. The video was synthesized from single pictures at different strain which was loaded manually.
Supplementary Video 2
The miniaturized stretching system (Fig. 5j) compatible with live-cell workstation can sustain up to ~50% strain. The video was synthesized from single pictures at different strain which was loaded manually.
Supplementary Video 5
Time-lapse video of the shape change of the incision after cutting the live section of a fibrotic mouse liver. Video snapshots and the quantified analysis are in Extended Data Fig. 6. Playing speed, 10×. Scale bar, 200 μm.
Supplementary Video 6
Time-lapse video of the incision in the in vitro model of liver fibrosis after laser cutting. Video snapshots and the quantified analysis are in Extended Data Fig. 5. Playing speed, 3×. Scale bar, 200 μm.
Supplementary Video 7
Time-lapse video of the quiescent primary HSC trapped around activated primary HSC clusters. Video sections are in Extended Data Fig. 7. Orange, activated primary HSC cluster. Cyan, quiescent primary HSC. Red, migration track. Playing speed, 6,000×. Scale bar, 100 μm.
Source data
Source Data Figures and Extended Data Figures
Statistical source data Figs. 2, 4, 5 and 6, and Extended Data Figs. 5, 6 and 10.
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Zhou, L., Shi, Z., Yang, X. et al. Tension-induced directional migration of hepatic stellate cells potentially coordinates liver fibrosis progression. Nat. Biomed. Eng 9, 1453–1470 (2025). https://doi.org/10.1038/s41551-025-01381-0
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DOI: https://doi.org/10.1038/s41551-025-01381-0