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Showing 1–50 of 139 results
Advanced filters: Author: Andrew L. Hook Clear advanced filters
  • Determining whether somatosensory neurons are involved in internal or external sensing remains a challenge. Here, the authors show that analyzing connectivity is a powerful approach to identify putative neural functions of somatosensory neurons in the fly.

    • Su-Yee J. Lee
    • Chris J. Dallmann
    • Sweta Agrawal
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Bacterial malic enzymes (ME) transform malate to pyruvate. One group, hybrid ME enzymes, are regulated by acetyl-CoA, linking the enzyme activity to the metabolic state of the cell. Structures of a representative hybrid ME MaeB reveal large conformational rearrangements that provide insight into the mechanism of allosteric inhibition by acetyl-CoA.

    • Christopher John Harding
    • Ian Thomas Cadby
    • Andrew Lee Lovering
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Molecular glues are monovalent compounds that can recruit a protein of interest to an E3 ligase so the protein of interest can be targeted for degradation. Here, Hughes et al. identify a molecule that selectively and potently degrades BRD9.

    • Scott J. Hughes
    • Wojciech J. Stec
    • Andrea Testa
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Chemically induced protein degradation is a powerful alternative to classical inhibition, but some proteins have deeply masked binding pockets that make the development of degrader molecules difficult. Here, the authors discover an alternate site on nuclear receptors that can be targeted by degraders.

    • Andrew D. Huber
    • Wenwei Lin
    • Taosheng Chen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Here the authors show thatMETTL9 enzyme sustains neural development in vertebrates by maintaining the secretory pathway, mainly independently of METTL9 catalytic activity. METTL9 loss in cells leads to Golgi fragmentation.

    • Azzurra Codino
    • Luca Spagnoletti
    • Luca Pandolfini
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-29
  • Here the authors show that codependence of dynein and kinesin KIF1C occurs through binding of the FTS–HOOK3–FHIP1B cargo adapter. Binding of KIF1C releases the HOOK3 autoinhibited folded conformation allowing dynein to bind the adapter. In this cocomplex, KIF1C further acts as a processivity factor for dynein.

    • Ferdos Abid Ali
    • Alexander J. Zwetsloot
    • Anne Straube
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 32, P: 756-766
  • A machine learning system leveraging a vision transformer and supervised contrastive learning accurately decodes elements of intraoperative surgical activity from videos commonly collected during robotic surgeries.

    • Dani Kiyasseh
    • Runzhuo Ma
    • Andrew J. Hung
    ResearchOpen Access
    Nature Biomedical Engineering
    Volume: 7, P: 780-796
  • Targeted degradation has emerged as a powerful therapeutic modality. In this study, the authors develop a lipid-based platform to deliver recombinant bioPROTACs into cells for targeted protein degradation, providing a platform for efficient intracellular degradation of proteins that may elude chemical inhibition.

    • Alexander Chan
    • Rebecca M. Haley
    • Andrew Tsourkas
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Constructing nanoparticle assemblies with atomic precision remains a major challenge in nanoscience. Here, the authors realize atomic‐level control over the 1D, 2D and hierarchical 3D assembly of Au nanoparticles by modulating the site‐specific surface ligands and associated counterions.

    • Qi Li
    • Jake C. Russell
    • Rongchao Jin
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-7
  • The anti-CRISPR protein IF9 (AcrIF9) specifically inhibits the type I-F CRISPR adaptive immune system. Here, the authors present the cryo-EM structure of AcrIF9 in complex with the type I-F CRISPR RNA-guided surveillance complex (Csy) and a dsDNA bound Csy-AcrIF9 structure, and find that AcrIF9 binding to the Csy complex triggers non-sequence specific dsDNA binding to Csy-AcrIF9, which might sequester the complex from its target DNA.

    • Marscha Hirschi
    • Wang-Ting Lu
    • Blake Wiedenheft
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-6
  • For homeostatic plasticity, neuronal circuits rely on poorly understood retrograde signals. Here, the authors identify a visual activity-dependent feedback loop mediated by the secreted Allnighter pseudokinase with effects on brain-wide proteostasis and sleep.

    • Shashank Shekhar
    • Andrew T. Moehlman
    • Helmut Krämer
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Arp2/3 complex forms branched actin networks that drive cell and organelle motility. Here, authors show that Coro7 targets branch junctions by binding Arp2/3 complex and actin filaments, promoting debranching, and supporting ER–Golgi transport.

    • Nooshin Shatery Nejad
    • Malgorzata Boczkowska
    • Roberto Dominguez
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Cytoplasmic dynein is a minus-end-directed microtubule-based motor that transports a wide range of cargoes, including organelles, RNAs, protein complexes and viruses. How a single motor can interact with and traffic such different cargoes has been unclear. Recent studies indicate how adaptor proteins, which can both activate dynein and link it to cargo, play an important role in this process.

    • Samara L. Reck-Peterson
    • William B. Redwine
    • Andrew P. Carter
    Reviews
    Nature Reviews Molecular Cell Biology
    Volume: 19, P: 382-398
  • The genomic and immune landscape of pre-invasive lung adenocarcinoma is poorly understood. Here, the authors perform exome and transcriptome sequencing on precursor legions and invasive lung adenocarcinomas, identifying recurrently mutated genes in pre/minimally invasive cases, and arm level alteration events linked to immune infiltration.

    • Haiquan Chen
    • Jian Carrot-Zhang
    • Matthew Meyerson
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-6
  • This study characterizes the world’s largest seagrass ecosystem in The Bahamas by integrating spatial estimates with remote sensing and performing extensive ground-truthing of benthic habitat with 2,542 diver surveys, as well as data obtained from instrument-equipped tiger sharks, which have strong fidelity to seagrass ecosystems.

    • Austin J. Gallagher
    • Jacob W. Brownscombe
    • Carlos M. Duarte
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-10
  • Epstein-Barr virus (EBV) episomes tether to the host chromosome via EBNA1. Here, using circular chromosome conformation capture (4C), Kim et al. identify attachment sites and show that EBV episomes preferentially associate with transcriptionally silenced genes in Burkitt lymphoma cells.

    • Kyoung-Dong Kim
    • Hideki Tanizawa
    • Paul M. Lieberman
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • A scheme to prepare a magic state, an important ingredient for quantum computers, on a superconducting qubit array using error correction is proposed that produces better magic states than those that can be prepared using the individual qubits of the device.

    • Riddhi S. Gupta
    • Neereja Sundaresan
    • Benjamin J. Brown
    ResearchOpen Access
    Nature
    Volume: 625, P: 259-263
  • In nature many microorganisms are able to change their shape to adapt to the changes in the environment. Inspired by this phenomenon, here Huang et al. build artificial microswimmers with body and flagellum made of programmable hydrogel-based materials incorporated with magnetic nanoparticles.

    • Hen-Wei Huang
    • Mahmut Selman Sakar
    • Bradley J. Nelson
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-10
  • Bridging covalent ligand discovery with chimeric degrader design has emerged as a mechanism to target proteins that lack enzymatic activity or are intractable. Here, the authors use biochemical and cellular tools to deconvolute the role of covalent modification in targeted protein degradation using Bruton’s tyrosine kinase.

    • James Schiemer
    • Andrew Maxwell
    • Matthew F. Calabrese
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • Cryo-electron microscopy and single-molecule studies reveal that the adaptors BICDR1 and HOOK3 recruit two dynein molecules to dynactin and thereby increase the force and speed of the dynein–dynactin microtubule motor.

    • Linas Urnavicius
    • Clinton K. Lau
    • Andrew P. Carter
    Research
    Nature
    Volume: 554, P: 202-206
  • A global dataset of the satellite-tracked movements of pelagic sharks and fishing fleets show that sharks—and, in particular, commercially important species—have limited spatial refuge from fishing effort.

    • Nuno Queiroz
    • Nicolas E. Humphries
    • David W. Sims
    Research
    Nature
    Volume: 572, P: 461-466
  • Researchers demonstrate systems in which optical solitons coexist and interact with topological solitonic structures localized in the molecular alignment field of a soft birefringent medium. The findings could lead to solitonic tractor beams and new light–matter self-patterning phenomena.

    • Guilhem Poy
    • Andrew J. Hess
    • Ivan I. Smalyukh
    Research
    Nature Photonics
    Volume: 16, P: 454-461
  • Type III secretion systems (T3SSs) are protein transport nanomachines that resemble molecular syringes and are found in numerous Gram-negative bacterial species. This Review summarizes our current understanding of the structure and function of these important protein secretion systems, incorporating new advances from cryo-electron microscopy and integrative imaging studies.

    • Wanyin Deng
    • Natalie C. Marshall
    • B. Brett Finlay
    Reviews
    Nature Reviews Microbiology
    Volume: 15, P: 323-337
  • Basal Pancreatic Ductal Adenocarcinoma (PDAC) is more aggressive than the classical subtype of pancreatic cancer. Here the authors report that RNA-binding protein LIN28B and its target HMGA2 drive basal PDAC pathogenesis by reducing PP2A methylation and activity, resulting in enhanced protein synthesis and aggressive features.

    • Stephanie Dobersch
    • Naomi Yamamoto
    • Sita Kugel
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • The ability to control proteins in cells and animals is important for experimental research and may have therapeutic applications. Here, the authors developed a new set of heterobifunctional small molecules based on the antibiotic trimethoprim that can degrade proteins that are genetically tagged with E. coli dihydrofolate reductase (eDHFR).

    • Jean M. Etersque
    • Iris K. Lee
    • Mark A. Sellmyer
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Inter- and intra-species comparison of Arabidopsis centromere variation identifies rapid cycles of transposon invasion and purging through satellite homogenization that drive centromere evolution.

    • Piotr Wlodzimierz
    • Fernando A. Rabanal
    • Ian R. Henderson
    Research
    Nature
    Volume: 618, P: 557-565
  • Stress relaxation in cell monolayers shows remarkable similarities with that of single cells, suggesting the rheology of epithelial tissues is mediated by the actomyosin cortex—with dynamics reminiscent of those on a cellular level.

    • Nargess Khalilgharibi
    • Jonathan Fouchard
    • Guillaume Charras
    Research
    Nature Physics
    Volume: 15, P: 839-847
  • Epithelial-to-mesenchymal transition (EMT) is a complex process regulated at multiple molecular levels. Here, the authors implement an analytic framework - PAMAF - to integrate data from twelve distinct omics modalities, which they use to understand the molecular changes and regulation during EMT in vitro.

    • Indranil Paul
    • Dante Bolzan
    • Andrew Emili
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-23
  • Antibody discovery is bottlenecked by the individual expression and evaluation of antigen specific hits. Here, the authors build an antibody screening workflow leveraging cell-free protein synthesis that enables expression and evaluation of hundreds of antibody fragments in less than 24 h.

    • Andrew C. Hunt
    • Bastian Vögeli
    • Michael C. Jewett
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-14
    • Andrew Goudie
    Books & Arts
    Nature
    Volume: 278, P: 80
  • Bacterial attachment and biofilm formation are problematic for medical devices. Hook et al. present a high-throughput method to find materials that resist bacterial attachment and colonization.

    • Andrew L Hook
    • Chien-Yi Chang
    • Morgan R Alexander
    Research
    Nature Biotechnology
    Volume: 30, P: 868-875
  • The nature of forest disturbances are changing, yet consequences for forest dynamics remain uncertain. Using a new index, Stanke et al. show the populations of over half of the most abundant tree species in the western US have declined in the last two decades, with grim implications for how temperate forests globally will respond to sustained anthropogenic and natural stress.

    • Hunter Stanke
    • Andrew O. Finley
    • David W. MacFarlane
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11