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Selective presynaptic inhibition of leg proprioception in behaving Drosophila

Abstract

Controlling arms and legs requires feedback from the proprioceptive sensory neurons that detect joint position and movement1,2. Proprioceptive feedback must be tuned for different behavioural contexts3,4,5,6, but the underlying circuit mechanisms remain poorly understood. Here, using calcium imaging in behaving Drosophila, we find that the axons of position-encoding leg proprioceptors are active across a range of behaviours, whereas the axons of movement-encoding leg proprioceptors are suppressed during walking and grooming. Using connectomics7,8,9, we identify a specific class of interneurons that provide GABAergic presynaptic inhibition to the axons of movement-encoding proprioceptors. These interneurons receive input from parallel excitatory and inhibitory descending pathways that are positioned to drive the interneurons in a context-specific and leg-specific manner. Calcium imaging from both the interneurons and their descending inputs confirms that their activity is correlated with self-generated but not passive leg movements. Taken together, our findings reveal a neural circuit that suppresses specific proprioceptive feedback signals during self-generated movements.

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Fig. 1: Proprioceptor axons from the Drosophila leg are positioned to receive presynaptic inhibition.
Fig. 2: The axons of position-encoding proprioceptors are not suppressed during active leg movements.
Fig. 3: The axons of movement-encoding proprioceptors are suppressed during active leg movements.
Fig. 4: GABAergic interneurons provide presynaptic inhibition to movement-encoding proprioceptor axons.
Fig. 5: GABAergic interneurons receive descending input from the brain.
Fig. 6: Summary of neural circuit for selectively suppressing proprioceptive movement feedback.

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Data availability

Calcium imaging and behavioural data generated for this study are available from Dryad at https://doi.org/10.5061/dryad.gqnk98t16 (ref. 84). FANC data were analysed from CAVE materialization v.840, timestamp 2024-01-17T08:10:01.179472. MANC data were analysed from v.1.0. FAFB/FlyWire data were analysed from v.783 with synapse predictions from ref. 85.

Code availability

Analyses were done in Matlab 2023a and Python 3.9. Code to recreate the figures is available at GitHub (https://github.com/chrisjdallmann/feco-inhibition). Python code made use of CAVEclient, neuPrint and FAFBseg to interact with the connectomes, NAVis and flybrains to visualize neurons, Brian 2 to simulate neural activity, SciPy for statistics, and Matplotlib, seaborn, NumPy and pandas for general computation and data visualization.

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Acknowledgements

We thank members of the Tuthill laboratory for technical assistance and feedback on the manuscript, in particular S.-Y. Lee for help with pilot experiments; K. Eichler and G. Jefferis for help identifying descending neurons; J. M. Ache, O. M. Ahmed, E. Azim, E. M. Chiappe and L. Zhang for feedback on the manuscript; J. S. Phelps, W.-C. A. Lee and the FANC community for contributions to proofreading the FANC connectome; and J. W. Truman and S. S. Bidaye for sharing Drosophila stocks. We used stocks obtained from the Bloomington Drosophila Stock Center (NIH P40OD018537). This work was supported by a postdoctoral research fellowship from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) project 432196121 to C.J.D; NIH grant K99NS117657 to S.A.; and a Searle Scholar Award, a Klingenstein-Simons Fellowship, a Pew Biomedical Scholar Award, a McKnight Scholar Award, a Sloan Research Fellowship, the New York Stem Cell Foundation and NIH grants R01NS102333 and U19NS104655 to J.C.T. J.C.T. is a New York Stem Cell Foundation Robertson Investigator.

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Authors and Affiliations

Authors

Contributions

C.J.D. and J.C.T. conceived the study. C.J.D. developed the set-up and analysis tools for calcium imaging in behaving animals. C.J.D. collected and analysed calcium imaging data for sensory and 9A neurons in behaving animals. Y.L. collected and analysed calcium imaging data for DNg74 neurons. S.A. collected and analysed calcium imaging data for hook neurons during passive leg movements. G.M.C. collected and analysed optogenetic data from flies on the treadmill. A.M. collected and analysed calcium imaging data for hook neurons during optogenetic activation of descending neurons. C.J.D., A.M. and A.S. made genetic reagents. A.S. acquired confocal images. C.J.D., S.A. and A.C. reconstructed neurons in FANC. C.J.D. and B.W.B. developed computational models. C.J.D. analysed connectome and transcriptome data. C.J.D. visualized the results. C.J.D., S.A. and J.C.T. acquired funding. J.C.T. supervised the project. C.J.D. and J.C.T. wrote the manuscript with input from other authors.

Corresponding author

Correspondence to John C. Tuthill.

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Extended data figures and tables

Extended Data Fig. 1 Cell-type specific genetic driver lines.

Confocal images showing the expression patterns of the GAL4 and split-GAL4 driver lines used to target FeCO neurons, 9A neurons, and DNg74 neurons. Green, GFP or mVenus; magenta, neuropil stain (nc82). Images of the claw line, the hook flexion line 1, and the DNg74 line are from FlyLight. In the neuromere of each front leg, the claw line targets about 25 axons, each hook line targets about 5 axons, the club line targets about 40 axons, and the 9A line targets about 10 neurons. The DNg74 line targets a single pair of descending neurons. Claw, hook, and club neurons are cholinergic21; 9A neurons30 and DNg74 neurons80 are GABAergic.

Extended Data Fig. 2 Computational models for predicting calcium signals in neurons.

a, Activation functions for claw, hook flexion, hook extension, and club and 9A neurons. b, Measured and fitted calcium signals of claw axons in response to applied ramp-and-hold movements of the femur-tibia joint (N = 10 flies per ramp-and-hold stimulus). Lines, mean of animal means; shadings, s.e.m. c, Cross-correlation between measured and fitted calcium signals at a time lag of zero (N = 10 flies, n = 20 trials in total). Black line, median. d, Same as b but for hook flexion axons (N = 14 flies). e, Same as c but for hook flexion axons (N = 14 flies, n = 28 trials in total). f, Same as b but for club axons (N = 14 flies). g, Same as c but for club axons (N = 14 flies, n = 28 trials in total). h, Response of the hook flexion model to an artificial femur-tibia joint angle without tracking noise. When the velocity threshold is larger than −50 deg/s, the model starts to predict strong calcium signals in response to slow flexions, as seen in the measured calcium signals. In bg, experimental data are from ref. 21.

Extended Data Fig. 3 Calcium signals in claw axons.

a, Median predicted and measured calcium signals in claw axons during resting, walking, and grooming on the treadmill (N = 8–11 flies, n = 133–480 bouts in total); bouts are at least 1 s in duration. Note that the calcium signals are smaller than 1 because they are normalized to the largest signal in the dataset, which occurred when the treadmill was removed (data not shown here). b, Difference between the absolute mean measured calcium signals and the absolute mean predicted calcium signal in the 0.5 s following transitions into and out of walking or grooming. c, Example of calcium imaging of claw axons in the neuromere of the left front leg without the treadmill. d, Cross-correlation between predicted and measured calcium signals per trial at a time lag of zero (N = 7 flies, n = 42 trials in total). Black line, median; black dot, trial shown in c. In a and b, distributions show kernel density estimations; boxes show IQR and median, whiskers extend up to 1.5 × IQR.

Extended Data Fig. 4 Calcium signals in hook flexion axons.

a, Example trial of calcium imaging of hook flexion axons on the treadmill in which the animal did not transition often between moving and not moving, resulting in a high cross-correlation between predicted and measured calcium signals. b, Median predicted and measured calcium signals during active and passive movement bouts on the platform (N = 5 flies, n = 264–536 bouts in total); bouts are at least 0.5 s in duration. Distributions, kernel density estimations; boxes, IQR and median, whiskers extend up to 1.5 × IQR. c, Example of calcium imaging of hook flexion axons without the treadmill. d, Cross-correlation between predicted and measured calcium signals per trial at a time lag of zero (N = 8 flies, n = 58 trials in total). Black line, median; black dot, trial shown in c. e, Predicted and measured calcium signals aligned to the transitions into and out of movement (N = 8 flies). Signals are baseline subtracted (mean from −0.5 to 0 s). Thin lines, animal means; thick lines, mean of means; shadings, s.e.m. f, Example calcium imaging of hook flexion axons (second driver line) during behavior on the treadmill. g, Same as d but for the second hook flexion driver line imaged on the treadmill (N = 6 flies, n = 64 trials in total). h, Same as e but for the second hook flexion driver line imaged on the treadmill (N = 6 flies). Movement includes walking and grooming. i, Example of calcium imaging of hook flexion axons (second driver line) without the treadmill. j, Same as d but for the second hook flexion driver line imaged without the treadmill (N = 7 flies, n = 40 trials in total). k, Same as e but for the second hook flexion driver line imaged without the treadmill (N = 7 flies).

Extended Data Fig. 5 Calcium signals in hook extension axons.

a, Left, confocal image of hook extension axons in the neuromere of the left front leg. Black box, imaging region; green, GFP; gray, neuropil stain (nc82); A, anterior; L, left. Right, mean tdTomato signal of a representative trial. Expression was consistent across animals (N = 15). b, Example of calcium imaging of hook extension axons during behavior on the treadmill. c, Cross-correlation between predicted and measured calcium signals per trial at a time lag of zero (N = 10 flies, n = 95 trials in total). Black line, median; black dot, trial shown in b. d, Predicted and measured calcium signals aligned to the transitions into and out of movement (N = 10 flies). Movement includes walking and grooming. Signals are baseline subtracted (mean from −0.5 to 0 s). Thin lines, animal means; thick lines, mean of means; shadings, s.e.m. e, Example of calcium imaging of hook extension axons without the treadmill. f, Same as c but for hook extension axons imaged without the treadmill (N = 9 flies, n = 77 trials in total). g, Same as d but for hook extension axons imaged without the treadmill (N = 9 flies). h, Example of calcium imaging of hook extension axons during behavior on the platform. i, Same as c but for hook extension axons imaged during platform trials (N = 5 flies, n = 51 trials in total). Active movements were excluded for the cross-correlation. j, Same as d but for hook extension axons imaged during platform trials (N = 5 flies). k, Median predicted and measured calcium signals during active and passive movement bouts on the platform (N = 5 flies, n = 246–556 bouts in total); bouts are at least 0.5 s in duration. Distributions, kernel density estimations; boxes, IQR and median, whiskers extend up to 1.5 × IQR.

Extended Data Fig. 6 Calcium signals in hook axons in response to passive leg movements resembling walking and grooming.

a, Experimental setup for two-photon calcium imaging from neurons in the neuromere of the left front leg while a front leg tibia is passively moved with a magnet-motor system. b, Probability distributions of walking and grooming kinematics recorded in the hook flexion neuron dataset and the walking and grooming kinematics used for passive replay with the setup shown in a. c, Example of calcium imaging of hook flexion axons during passive tibia movements. d, Predicted and measured calcium signals aligned to the transition into passive movement (N = 7 flies). Movement includes passive walking and grooming. Signals are baseline subtracted (mean from −0.5 to 0 s). Thin lines, animal means; thick lines, mean of means; shadings, s.e.m. e, Cross-correlation between predicted and measured calcium signals per trial at a time lag of zero (N = 7 flies, n = 12 trials in total). Trials are either walking or grooming replay. Black line, median. f, Same as c but for hook extension axons. g, Same as d but for hook extension axons (N = 4 flies). h, Same as e but for hook extension axons (N = 4 flies, n = 7 trials in total).

Extended Data Fig. 7 RNA-seq data for club neurons and calcium signals in club axons.

a, Expression levels of receptor genes in club neurons. b, Left, confocal image of club axons in the neuromere of the left front leg. Black box, imaging region; green, GFP; gray, neuropil stain (nc82); A, anterior; L, left. Right, mean tdTomato signal of a representative trial. Expression was consistent across animals (N = 6). c, Example of calcium imaging of club axons during behavior on the treadmill. d, Cross-correlation between predicted and measured calcium signals per trial at a time lag of zero (N = 6 flies, n = 48 trials in total). Black line, median; black dot, trial shown in c. e, Predicted and measured calcium signals aligned to the transitions into and out of movement (N = 6 flies). Movement includes walking and grooming. Signals are baseline subtracted (mean from −0.5 to 0 s). Thin lines, animal means; thick lines, mean of means; shadings, s.e.m. f, Example of calcium imaging of club axons without the treadmill. g, Same as d but for club axons imaged without the treadmill (N = 5 flies, n = 41 trials in total). h, Same as e but for club axons imaged without the treadmill (N = 5 flies). i, Example of calcium imaging of club axons in which the treadmill was lowered out of reach for the fly after 5 s. j, Median calcium signals during resting bouts on and off the treadmill (N = 6 flies, n = 68–111 bouts in total); bouts are at least 1 s in duration. Distributions, kernel density estimations; boxes, IQR and median, whiskers extend up to 1.5 × IQR.

Extended Data Fig. 8 Calcium imaging and optogenetic manipulation of 9A neurons.

a, Example of calcium imaging of 9A neurons in the neuromere of the left front leg without the treadmill. b, Cross-correlation between predicted and measured calcium signals per trial at a time lag of zero (N = 9 flies, n = 56 trials in total). Black line, median; black dot, trial shown in a. c, Predicted and measured calcium signals aligned to the transitions into and out of movement (N = 9 flies). Signals are baseline subtracted (mean from −0.5 to 0 s). Thin lines, animal means; thick lines, mean of means; shadings, s.e.m. d, Examples of calcium imaging of 9A neurons during hind leg grooming. e, Experimental setup for optogenetic activation or silencing of neurons in the neuromere of the left front leg. f, Examples of 9A silencing (top) and activation (bottom) in experimental flies walking on the treadmill. g, Mean forward velocity of experimental and control flies during the 2 s trials (66.6 ms bins; N = 10–12 flies). Thick lines, means of animal means; shadings, s.e.m. h, Femur-tibia angle of the left front leg of experimental and control flies normalized in time to the step cycle (0.04 bins; N = 8–12 flies). Thick lines, mean of animal means; shadings, s.e.m. i, Mean differences in joint angle amplitudes between steps during (laser on) and before (pre) the optogenetic manipulation.

Extended Data Fig. 9 Connectivity of neurons of interest in the VNC and the brain.

a, Hook axons, chief 9A neurons presynaptic to hook axons, and the top two descending neurons presynaptic to the chief 9A neurons in the male VNC connectome (MANC). A, anterior; L, left. b, Top two descending neurons presynaptic to the chief 9A neuron in the female VNC connectome (FANC). c, Outputs of chief 9A neurons onto different neuron types (MANC connectome). Black bars, output onto hook axons; L, left side of VNC; R, right side of VNC; 1, front leg neuromere; 2, middle leg neuromere; 3, hind leg neuromere. d, Connectivity of descending neurons with GABAergic neurons presynaptic to claw and hook axons. Descending neurons known to drive walking and grooming are indicated. Neurotransmitter predictions are from matched descending neurons in MANC81. e, Connectivity between descending neurons and 9A neurons. Numbers indicate connection strength to 9A as percent input synapses (top two rows) or absolute synapses (bottom two rows). Synapses from all DNg12 were summed. For “Other 9A” neurons, percent input synapses were averaged and absolute synapses were summed. f, Outputs of DNg74 in the VNC (MANC connectome). g, Inputs of DNg74 in the brain (FlyWire connectome). GNG, gnathal ganglia; AVLP, anterior ventrolateral protocerebrum; SAD, saddle; ICL, inferior clamp.

Extended Data Fig. 10 Calcium signals in hook axons in response to DNg100 activation and calcium signals in DNg74.

a, Expected indirect inhibitory effect of DNg100 activation onto hook axons. b, Examples showing hook flexion responses with and without optogenetic activation of DNg100. During the activation (gray, left), the PMT of the microscope was switched off, as indicated by a sudden drop in fluorescence. c, Calcium signals from hook flexion axons aligned to the offset of the LED and the equivalent time point in control trials (N = 5 flies, n = 5 transitions per fly). Thin lines, animal means; thick lines, mean of means; shadings, s.e.m. Note that the “spike” seen in some calcium signals directly after the offset is an artifact. d, Mean change in calcium signals per animal within 2 s after the offset of the LED or the equivalent time point in control trials (two-sided paired t-test, t(4) = 4.54, p = 0.01). Positive values indicate that calcium signals increased after the offset of the LED. e, GFP signals from FeCO axons aligned to switching on the PMT (N = 3 flies, n = 12 transitions per fly). f, Example of calcium imaging of DNg74 in the neuromere of the left front leg without the treadmill.

Supplementary information

Supplementary Discussion

Discussion of the behavioural function of 9A-mediated presynaptic inhibition and the DNg100 (BDN2) activation experiments.

Reporting Summary

Supplementary Table 1

Genotypes of flies used in this study with source and identifier, grouped by figure.

Supplementary Table 2

Connectome identifiers, names and predicted neurotransmitters of neurons of interest in the FANC, MANC and FAFB/FlyWire connectomes.

Supplementary Video 1

Neurons of interest in the FANC connectome.

Supplementary Video 2

Imaging of claw axons. Example trials of two-photon calcium imaging of claw axons and behaviour tracking with and without the treadmill (2× speed).

Supplementary Video 3

Imaging of hook axons. Example trials of two-photon calcium imaging of hook flexion axons and behaviour tracking with and without the treadmill and the platform (2× speed).

Supplementary Video 4

Imaging of club axons. Example trials of two-photon calcium imaging of club axons and behaviour tracking with and without the treadmill (2× speed).

Supplementary Video 5

Imaging of 9A axons. Example trials of two-photon calcium imaging of 9A axons and behaviour tracking with and without the treadmill and the platform (2× speed).

Supplementary Video 6

Imaging of DNg74 axons. Example trials of two-photon calcium imaging of DNg74 (web) axons and behaviour tracking with and without the treadmill (2× speed).

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Dallmann, C.J., Luo, Y., Agrawal, S. et al. Selective presynaptic inhibition of leg proprioception in behaving Drosophila. Nature (2025). https://doi.org/10.1038/s41586-025-09554-2

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