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Showing 1–50 of 283 results
Advanced filters: Author: Geneva Q. Le Clear advanced filters
  • Riveland and Pouget model instructed action, showing that shared structure in task and semantic representations allows language to compose practiced skills in novel settings. Models make predictions for neural activity in human language areas.

    • Reidar Riveland
    • Alexandre Pouget
    ResearchOpen Access
    Nature Neuroscience
    Volume: 27, P: 988-999
  • Respiratory virus genomic surveillance output is unevenly distributed globally. Here, the authors show that addressing this imbalance could substantially reduce the time to first detection of novel (variant) viruses, enhancing surveillance effectiveness and efficiency.

    • Simon P. J. de Jong
    • Brooke E. Nichols
    • Colin A. Russell
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-12
  • The CMS Collaboration reports the measurement of the spin, parity, and charge conjugation properties of all-charm tetraquarks, exotic fleeting particles formed in proton–proton collisions at the Large Hadron Collider.

    • A. Hayrapetyan
    • V. Makarenko
    • A. Snigirev
    ResearchOpen Access
    Nature
    Volume: 648, P: 58-63
  • Identifying jets originating from heavy quarks plays a fundamental role in hadronic collider experiments. In this work, the ATLAS Collaboration describes and tests a transformer-based neural network architecture for jet flavour tagging based on low-level input and physics-inspired constraints.

    • G. Aad
    • E. Aakvaag
    • L. Zwalinski
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-22
  • The quark structure of the f0(980) hadron is still unknown after 50 years of its discovery. Here, the CMS Collaboration reports a measurement of the elliptic flow of the f0(980) state in proton-lead collisions at a nucleon-nucleon centre-of-mass energy of 8.16 TeV, providing strong evidence that the state is an ordinary meson.

    • A. Hayrapetyan
    • A. Tumasyan
    • A. Zhokin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • The ability to perform operations in an indefinite causal order allows advantages for various quantum information-processing tasks, yet it’s still unclear to what extent such exotic sequences could be simulated using standard quantum circuits. Here, the authors prove that such simulations - even if approximate or probabilistic - would incur an exponential quantum query complexity overhead.

    • Jessica Bavaresco
    • Hlér Kristjánsson
    • Satoshi Yoshida
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • The adult ocellated lizard skin colour pattern is effectively generated by a stochastic cellular automaton (CA) of skin scales. Here authors use reaction diffusion (RD) numerical simulations in 3D on realistic lizard skin geometries and demonstrate that skin thickness variation on its own is sufficient to cause scale-by-scale coloration and CA dynamics during RD patterning.

    • Anamarija Fofonjka
    • Michel C. Milinkovitch
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • Surface plasmon-polaritons (SPPs) are rarely observed in correlated oxides because of a low plasma frequency and strong plasmonic losses. In this paper, clear signatures of SPPs are found at metal-insulator boundaries in a phase-separated nickelate system NdNiO3.

    • Weiwei Luo
    • Adrien Bercher
    • Alexey B. Kuzmenko
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • XCR1+ type 1 conventional DCs (cDC1s) are crucial to mount anti-tumor immune responses, however their infiltration within tumours is often limited. Here the authors show that cDC1 infiltration could be expanded by intratumoral delivery of mesenchymal stromal cells engineered to express the membrane bound form of FLT3L in combination with poly(I:C) or CXCL9 and CCL5, improving anti-tumor immunity in preclinical models.

    • Louise Gorline
    • Fillipe Luiz Rosa do Carmo
    • Pierre Guermonprez
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-22
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Circadian rhythms have been shown to influence immune responses, but it is unclear whether this influences responses to vaccines. Here the authors show that dendritic cells migrate in a circadian rhythm meaning that interactions with T cells are altered leading to differential vaccine responses.

    • Louise Madeleine Ince
    • Coline Barnoud
    • Christoph Scheiermann
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • Excess ketogenesis can lead to ketoacidosis, a serious complication in patients with diabetes. Here the authors report an insulin independent pathway, the hepatic nonparenchymal S100A9-TLR4-mTORC1 axis, that is able to normalize diabetic ketogenesis and pre-clinical data to suggest potential for development of S100A9 based adjunctive therapy to insulin.

    • Gloria Ursino
    • Giorgio Ramadori
    • Roberto Coppari
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-17
  • Mendelian randomization (MR) identifies causal relationships from observational data but has increased error rates when the genetic variants used as instruments come from a single region, a typical scenario when assessing molecular traits like protein or metabolite levels as risk factors. Here the authors introduce a single-region pleiotropy-robust MR method, validating the method on three ground truth sources, showing its capability to identify disease-causing molecular traits.

    • Adriaan van der Graaf
    • Robert Warmerdam
    • Zoltán Kutalik
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • High-resolution geospatial mapping found that the annual incidence of cholera shifted from western to central and eastern Africa between 2011 and 2020, with the latter regions more likely to report cholera in 2022–2023, reflecting instability in cholera burden patterns that can impact progress in disease control.

    • Javier Perez-Saez
    • Qulu Zheng
    • Elizabeth C. Lee
    ResearchOpen Access
    Nature Medicine
    Volume: 31, P: 3380-3387
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • Standard decision models assume that all options' values are encoded on a common scale by a unique representation system. Across nine experiments, Garcia et al. provide evidence that challenges this assumption: participants treat experiential and symbolic options asymmetrically.

    • Basile Garcia
    • Maël Lebreton
    • Stefano Palminteri
    Research
    Nature Human Behaviour
    Volume: 7, P: 611-626
  • Autoimmune encephalitis (AIE) may involve neuron-specific cytotoxic T cells, but evidence is still lacking. Here the authors use induced pluripotent stem cells from patients with AIE and single cell RNA-sequencing of ex vivo CD8 T cells to find neuron-specific, KIR+CD8+ T cells with altered transcriptome that potentially contribute to AIE etiology.

    • Sylvain Perriot
    • Samuel Jones
    • Renaud Du Pasquier
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • A hybrid analogue–digital quantum simulator is used to demonstrate beyond-classical performance in benchmarking experiments and to study thermalization phenomena in an XY quantum magnet, including the breakdown of Kibble–Zurek scaling predictions and signatures of the Kosterlitz–Thouless phase transition.

    • T. I. Andersen
    • N. Astrakhantsev
    • X. Mi
    ResearchOpen Access
    Nature
    Volume: 638, P: 79-85
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Entanglement was observed in top–antitop quark events by the ATLAS experiment produced at the Large Hadron Collider at CERN using a proton–proton collision dataset with a centre-of-mass energy of √s  = 13 TeV and an integrated luminosity of 140 fb−1.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature
    Volume: 633, P: 542-547
  • Saeedi Saravi and colleagues demonstrate an age-related increase in the gut microbial metabolite phenylacetic acid (PAA) in humans and mice, linked to Clostridium bacteria. In mice, they find that PAA triggers endothelial senescence, linking the microbiome to vascular aging.

    • Seyed Soheil Saeedi Saravi
    • Benoit Pugin
    • Jürg H. Beer
    ResearchOpen Access
    Nature Aging
    Volume: 5, P: 1025-1045
  • Modeling analysis from the Global Dietary Database estimated that 70% of new global cases of type 2 diabetes are attributable to suboptimal intake of 11 dietary factors, with substantial differences in dietary risks across world regions and nations.

    • Meghan O’Hearn
    • Laura Lara-Castor
    • Rubina Hakeem
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 982-995
  • Estimates from the Global Dietary Database indicated that 2.2 million new type 2 diabetes and 1.2 million new cardiovascular disease cases were attributable to sugar-sweetened beverages worldwide in 2020, with the highest burdens in sub-Saharan Africa, Latin America and the Caribbean.

    • Laura Lara-Castor
    • Meghan O’Hearn
    • Rubina Hakeem
    ResearchOpen Access
    Nature Medicine
    Volume: 31, P: 552-564
  • Alkhoury et al. show that the class 3 phosphatidylinositol-3-kinase Vps15 subunit coactivates the circadian clock transcription factor Bmal1–Clock for metabolic rhythmicity in the liver and promotes pro-anabolic de novo purine synthesis.

    • Chantal Alkhoury
    • Nathaniel F. Henneman
    • Ganna Panasyuk
    ResearchOpen Access
    Nature Cell Biology
    Volume: 25, P: 975-988
  • Asthenozoospermia is a major cause of male infertility, and multiple morphological abnormalities of the flagella (MMAF) is a particularly severe form. Here, using whole-exome sequencing of 78 MMAF patients, the authors identify mutations in two WDR proteins, CFAP43 and CFAP44, and confirm that these proteins are required for flagellogenesis in mouse and Trypanosoma brucei.

    • Charles Coutton
    • Alexandra S. Vargas
    • Pierre F. Ray
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-18
  • The Large Hadron Collider beauty collaboration reports a test of lepton flavour universality in decays of bottom mesons into strange mesons and a charged lepton pair, finding evidence of a violation of this principle postulated in the standard model.

    • R. Aaij
    • C. Abellán Beteta
    • G. Zunica
    ResearchOpen Access
    Nature Physics
    Volume: 18, P: 277-282
  • Reduced glomerular filtration rate (eGFR) is a hallmark of chronic kidney disease. Here, Pattaro et al. conduct a meta-analysis to discover several new loci associated with variation in eGFR and find that genes associated with eGFR loci often encode proteins potentially related to kidney development.

    • Cristian Pattaro
    • Alexander Teumer
    • Caroline S. Fox
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-19