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Showing 1–50 of 431 results
Advanced filters: Author: Peter L. Simone Clear advanced filters
  • A global research network monitoring the Amazon for 30 years reports in this study that tree size increased by 3% each decade.

    • Adriane Esquivel-Muelbert
    • Rebecca Banbury Morgan
    • Oliver L. Phillips
    ResearchOpen Access
    Nature Plants
    P: 1-10
  • Analysis combining multiple global tree databases reveals that whether a location is invaded by non-native tree species depends on anthropogenic factors, but the severity of the invasion depends on the native species diversity.

    • Camille S. Delavaux
    • Thomas W. Crowther
    • Daniel S. Maynard
    ResearchOpen Access
    Nature
    Volume: 621, P: 773-781
  • Species’ traits and environmental conditions determine the abundance of tree species across the globe. Here, the authors find that dominant tree species are taller and have softer wood compared to rare species and that these trait differences are more strongly associated with temperature than water availability.

    • Iris Hordijk
    • Lourens Poorter
    • Thomas W. Crowther
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Federated learning (FL) algorithms have emerged as a promising solution to train models for healthcare imaging across institutions while preserving privacy. Here, the authors describe the Federated Tumor Segmentation (FeTS) challenge for the decentralised benchmarking of FL algorithms and evaluation of Healthcare AI algorithm generalizability in real-world cancer imaging datasets.

    • Maximilian Zenk
    • Ujjwal Baid
    • Spyridon Bakas
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • How tree diversity effects on ecosystem functioning vary along climatic gradients is unclear. Here, analysing data from 15 experimental forest sites, the authors show that tree growth responses to neighbourhood species diversity are stronger in wetter climates but are unaffected by interannual climatic variation within sites.

    • Liting Zheng
    • Inés Ibáñez
    • Peter B. Reich
    Research
    Nature Ecology & Evolution
    Volume: 9, P: 1812-1824
  • Wood density is a key control on tree biomass, and understanding its spatial variation improves estimates of forest carbon stock. Sullivan et al. measure >900 forest plots to quantify wood density and produce high resolution maps of its variation across South American tropical forests.

    • Martin J. P. Sullivan
    • Oliver L. Phillips
    • Joeri A. Zwerts
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Wood density is an important plant trait. Data from 1.1 million forest inventory plots and 10,703 tree species show a latitudinal gradient in wood density, with temperature and soil moisture explaining variation at the global scale and disturbance also having a role at the local level.

    • Lidong Mo
    • Thomas W. Crowther
    • Constantin M. Zohner
    ResearchOpen Access
    Nature Ecology & Evolution
    Volume: 8, P: 2195-2212
  • Precise Notch signaling control is vital for many biological processes. Here, the authors identify the aGPCR Latrophilin to enhance Notch activity in the C. elegans germline stem cell niche involving binding to the Notch ligand LAG-2 via two domains.

    • Willem Berend Post
    • Victoria Elisabeth Groß
    • Simone Prömel
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Timothy Frayling, Joel Hirschhorn, Peter Visscher and colleagues report a meta-analysis of genome-wide association studies for adult height in 253,288 individuals. They identify 697 variants in 423 loci significantly associated with adult height and find that these variants cluster in pathways involved in growth and together explain one-fifth of the heritability for this trait.

    • Andrew R Wood
    • Tonu Esko
    • Timothy M Frayling
    Research
    Nature Genetics
    Volume: 46, P: 1173-1186
  • Here the authors analyse rare coding variants to identify schizophrenia risk genes. Associations are reported at exome-wide significance for STAG1 and ZNF136, and at a false discovery rate of 5% for SLC6A1, PCLO, ZMYND11, BSCL2, KLC1 and CGREF1.

    • Sophie L. Chick
    • Peter Holmans
    • Elliott Rees
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Protein condensates exhibit diverse material properties linked to cellular functions, yet characterizing these properties remains challenging. Here, the authors employ a microfluidic sample deposition and nanometre-resolution mapping technique to characterize the time-dependent material properties in FUS protein condensates, revealing two distinct phase transitions within FUS condensates.

    • Alyssa Miller
    • Zenon Toprakcioglu
    • Michele Vendruscolo
    ResearchOpen Access
    Communications Chemistry
    Volume: 8, P: 1-12
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Spectroscopic studies and theoretical calculations of the electrocatalytic oxygen evolution reaction establish that reaction rates depend on the amount of charge stored in the electrocatalyst, and not on the applied potential.

    • Hong Nhan Nong
    • Lorenz J. Falling
    • Travis E. Jones
    Research
    Nature
    Volume: 587, P: 408-413
  • Hybrid quantum systems combine efficient high-quality quantum dot sources with atomic vapours that can serve as precise frequency standards or quantum memories. Here, Portalupi et al. demonstrate an optimized atomic Cs-Faraday filter working with single photons emitted from a semiconductor quantum dot.

    • Simone Luca Portalupi
    • Matthias Widmann
    • Ilja Gerhardt
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-6
  • Tree mortality has been shown to be the dominant control on carbon storage in Amazon forests, but little is known of how and why Amazon forest trees die. Here the authors analyse a large Amazon-wide dataset, finding that fast-growing species face greater mortality risk, but that slower-growing individuals within a species are more likely to die, regardless of size.

    • Adriane Esquivel-Muelbert
    • Oliver L. Phillips
    • David Galbraith
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • This Review provides an overview of the main applications of single-port robotic surgery in urology, presenting emerging outcomes and discussing the transformative potential of this approach.

    • Arianna Biasatti
    • Nicolas A. Soputro
    • Riccardo Autorino
    Reviews
    Nature Reviews Urology
    P: 1-18
  • The authors use time-resolved scanning near-field optical microscopy to probe the ultrafast excitonic processes and their impact on waveguide operation in transition metal dichalcogenide crystals. They observe significant modulation of the complex index by monitoring waveguide modes on the fs time scale, and identify both coherent and incoherent manipulations of WSe2 excitonic resonances.

    • Aaron J. Sternbach
    • Simone Latini
    • D. N. Basov
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-6
  • Along with a back-to-back published paper from Zielisnki and co. in this issue of Nature Immunology, this paper shows that NaCl affects CD8+ T cell function by counteracting the exhaustion of these cells in the tumor microenvironment.

    • Caterina Scirgolea
    • Rosa Sottile
    • Enrico Lugli
    Research
    Nature Immunology
    Volume: 25, P: 1845-1857
  • This pilot trial showed that perioperative treatment with the isocitrate dehydrogenase (IDH) inhibitor safusidenib of patients with low-grade IDH-mutant glioma, with craniotomy and lumbar puncture before and after treatment, is feasible and safe and enabled in-depth translational investigation of safusidenib treatment-induced changes in the tumor, including electrophysiological effects.

    • Katharine J. Drummond
    • Montana Spiteri
    • James R. Whittle
    ResearchOpen Access
    Nature Medicine
    Volume: 31, P: 3451-3463
  • The GLASS Consortium studies the evolutionary trajectories of 222 patients with a diffuse glioma to aid in our understanding of tumour progression and treatment failure

    • Floris P. Barthel
    • Kevin C. Johnson
    • Roel G. W. Verhaak
    Research
    Nature
    Volume: 576, P: 112-120
  • Around half of the heritability underpinning familial high-grade serous ovarian carcinoma remains unidentified. Here, the authors show that extremely rare protein encoding loss-of-function variants, with a high degree of genetic heterogeneity, may account for some of this missing heritability.

    • Deepak N. Subramanian
    • Magnus Zethoven
    • Ian G. Campbell
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • The accretion geometry of X-ray binary Cygnus X-3 is determined here from IXPE observations. X-ray polarization reveals a narrow funnel with reflecting walls, which focuses emission, making Cyg X-3 appear as an ultraluminous X-ray source.

    • Alexandra Veledina
    • Fabio Muleri
    • Silvia Zane
    Research
    Nature Astronomy
    Volume: 8, P: 1031-1046
  • The authors analyse tree responses to an extreme heat and drought event across South America to understand long-term climate resistance. While no more sensitive to this than previous lesser events, forests in drier climates showed the greatest impacts and thus vulnerability to climate extremes.

    • Amy C. Bennett
    • Thaiane Rodrigues de Sousa
    • Oliver L. Phillips
    ResearchOpen Access
    Nature Climate Change
    Volume: 13, P: 967-974
  • Over half the world’s rivers dry periodically, yet little is known about the biological communities in dry riverbeds. This study examines biodiversity across 84 non-perennial rivers in 19 countries using DNA metabarcoding. It finds that nutrient availability, climate and biotic interactions influence the biodiversity of these dry environments.

    • Arnaud Foulquier
    • Thibault Datry
    • Annamaria Zoppini
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Analysis of ground-sourced and satellite-derived models reveals a global forest carbon potential of 226 Gt outside agricultural and urban lands, with a difference of only 12% across these modelling approaches.

    • Lidong Mo
    • Constantin M. Zohner
    • Thomas W. Crowther
    ResearchOpen Access
    Nature
    Volume: 624, P: 92-101
  • The heterogenous nature of rheumatoid arthritis renders the prediction of responsiveness to biological treatments difficult. Here the authors analyze bulk RNA-seq data from the STRAP trial (n = 208) to build a machine-learning model for predicting responses to etanercept, tocilizumab and rituximab with AUCs around 0.75 to potentially assist in therapy planning.

    • Myles J. Lewis
    • Cankut Çubuk
    • Anne Barton
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Genome-wide association meta-analyses of waist-to-hip ratio adjusted for body mass index in more than 224,000 individuals identify 49 loci, 33 of which are new and many showing significant sexual dimorphism with a stronger effect in women; pathway analyses implicate adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution.

    • Dmitry Shungin
    • Thomas W. Winkler
    • Karen L Mohlke
    Research
    Nature
    Volume: 518, P: 187-196
  • Warming temperatures and interactions between plants are the main drivers of changes in Arctic plant communities in response to climate change, and there is no evidence of overall biotic homogenization.

    • Mariana García Criado
    • Isla H. Myers-Smith
    • Mark Vellend
    ResearchOpen Access
    Nature
    Volume: 642, P: 653-661
  • Immune lymphocyte estimation from nucleotide sequencing (ImmuneLENS) infers B cell and T cell fractions from whole-genome sequencing data. Applied to the 100,000 Genomes Project datasets, circulating T cell fraction provides sex-dependent and prognostic insights in patients.

    • Robert Bentham
    • Thomas P. Jones
    • Nicholas McGranahan
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 694-705
  • Analyses of genomes from 914 children, adolescents, and young adults provide a comprehensive resource of genomic alterations across a spectrum of common childhood cancers.

    • Susanne N. Gröbner
    • Barbara C. Worst
    • Stefan M. Pfister
    ResearchOpen Access
    Nature
    Volume: 555, P: 321-327
  • IL-36 receptor is crucial for host defense and tissue repair. Here, the authors describe identification and characterization of low molecular weight inhibitors of the IL-36 receptor using encoded library technologies. This represents a rare example of small molecules inhibiting a member of IL-1 receptor family.

    • Juraj Velcicky
    • Gregor Cremosnik
    • Georg Martiny-Baron
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Examining drivers of the latitudinal biodiversity gradient in a global database of local tree species richness, the authors show that co-limitation by multiple environmental and anthropogenic factors causes steeper increases in richness with latitude in tropical versus temperate and boreal zones.

    • Jingjing Liang
    • Javier G. P. Gamarra
    • Cang Hui
    Research
    Nature Ecology & Evolution
    Volume: 6, P: 1423-1437
  • Analyses of multiregional tumour samples from 421 patients with non-small cell lung cancer prospectively enrolled to the TRACERx study reveal determinants of tumour evolution and relationships between intratumour heterogeneity and clinical outcome.

    • Alexander M. Frankell
    • Michelle Dietzen
    • Charles Swanton
    ResearchOpen Access
    Nature
    Volume: 616, P: 525-533
  • Protection afforded by inorganic minerals is assumed to make mineral-associated organic carbon less susceptible to loss under climate change than particulate organic carbon. However, a global study of soil organic carbon from drylands suggests that this is not the case.

    • Paloma Díaz-Martínez
    • Fernando T. Maestre
    • César Plaza
    Research
    Nature Climate Change
    Volume: 14, P: 976-982
  • Analyses of 475 ancient horse genomes show modern horses emerged around 2200 bce, coinciding with sudden expansion across Eurasia, refuting the narrative of large horse herds accompanying earlier migrations of steppe peoples across Europe.

    • Pablo Librado
    • Gaetan Tressières
    • Ludovic Orlando
    ResearchOpen Access
    Nature
    Volume: 631, P: 819-825
  • JNJ-9676—a small-molecule inhibitor targeting coronavirus M protein that shows excellent efficacy in Syrian golden hamster models—binds to and stabilizes the M protein dimer in an altered conformational state between its long and short forms, preventing the release of infectious virus.

    • Ellen Van Damme
    • Pravien Abeywickrema
    • Marnix Van Loock
    ResearchOpen Access
    Nature
    Volume: 640, P: 506-513
  • A base-editing approach optimized to target the retina shows high editing rates in a mouse model of Stargardt disease, as well as in nonhuman primates and ex vivo human retinal explants, paving the way for potential clinical applications.

    • Alissa Muller
    • Jack Sullivan
    • Bence György
    ResearchOpen Access
    Nature Medicine
    Volume: 31, P: 490-501
  • Kyle Gaulton, Mark McCarthy, Andrew Morris and colleagues report fine mapping and genomic annotation of 39 established type 2 diabetes susceptibility loci. They find that the set of potential causal variants is enriched for overlap with FOXA2 binding sites in human islet and liver cells, and they show that a likely causal variant near MTNR1B increases FOXA2-bound enhancer activity, providing a molecular mechanism to explain the effect of this locus on disease risk.

    • Kyle J Gaulton
    • Teresa Ferreira
    • Andrew P Morris
    Research
    Nature Genetics
    Volume: 47, P: 1415-1425
  • Alternative stable states in forests have implications for the biosphere. Here, the authors combine forest biodiversity observations and simulations revealing that leaf types across temperate regions of the NH follow a bimodal distribution suggesting signatures of alternative forest states.

    • Yibiao Zou
    • Constantin M. Zohner
    • Thomas W. Crowther
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Analysis of the pivotal phase 3 ZUMA-7 trial identifies tumor gene expression signatures that are uniquely predictive of anti-CD19 CAR T cell response and event-free survival in second-line treatment for patients with relapsed or refractory large B cell lymphoma.

    • Frederick L. Locke
    • Simone Filosto
    • Jérôme Galon
    ResearchOpen Access
    Nature Medicine
    Volume: 30, P: 507-518