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Showing 1–50 of 329 results
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  • Baretić and Missoury et al. identify vertebrate proteins FAM118B and FAM118A as sirtuins similar to bacterial antiphage enzymes and show that FAM118A/B processing of NAD involves head-to-tail filament formation and a partnership between the two paralogs.

    • Domagoj Baretić
    • Sophia Missoury
    • Marcin J. Suskiewicz
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 32, P: 2526-2541
  • Using satellite ocean-color data, this study reveals a 20-year decline in plankton biomass in a major nitrogen-fixation hotspot, suggesting reduced nitrogen inputs and potential implications for global biogeochemical cycles and climate regulation.

    • Alain Fumenia
    • Hubert Loisel
    • Thierry Moutin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • EGFR inhibitors are standard of care in patients with EGFR-mutant non-small cell lung cancer (NSCLC) but resistance often develops. Here the authors report that the evolution of EGFR inhibitor resistance in EGFR-mutant NSCLC results in a sensitivity to the compound, MCB-613, and investigate the underlying mechanism of action.

    • Christopher F. Bassil
    • Kerry Dillon
    • Kris C. Wood
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-20
  • SARS-CoV-2 spike protein mediates viral entry into host cells. Shi et al. report a cryoEM structure of a proteolytically processed spike, possibly representing a functional intermediate state, with important implications for intervention strategies.

    • Wei Shi
    • GM Jonaid
    • Bing Chen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Biocatalytic strategies typically transform only one alkene isomer into products, limiting the yield. Now a biocatalyst is reported to convert both isomeric silyl enol ethers into chiral α-branched ketones with high efficiency and excellent selectivity.

    • Runze Mao
    • Doris Mia Taylor
    • Frances H. Arnold
    Research
    Nature Synthesis
    Volume: 3, P: 256-264
  • Here they show that specialized filopodia are essential for steroid hormone secretion in fruit flies, highlighting a vesicle-mediated mechanism adjusted by filopodia dynamics that challenges a simple secretory diffusion model.

    • Eléanor Simon
    • Raphaël Bonche
    • Nuria Magdalena Romero
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • High-depth sequencing of non-cancerous tissue from patients with metastatic cancer reveals single-base mutational signatures of alcohol, smoking and cancer treatments, and reveals how exogenous factors, including cancer therapies, affect somatic cell evolution.

    • Oriol Pich
    • Sophia Ward
    • Nicholas McGranahan
    ResearchOpen Access
    Nature
    P: 1-11
  • Although IFN-γ is known to regulate T cell function and expansion during virus-specific responses, its impact on T cells with varying avidity for antigen remains unclear. Here, the authors demonstrate that IFN-γ promotes the expansion of low-avidity CD8+ T cells during the effector phase, but favours those with high avidity in the memory pool.

    • Lion F. K. Uhl
    • Han Cai
    • Audrey Gerard
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • We show the evolution of a case of EGFR mutant lung cancer treated with a combination of erlotinib, osimertinib, radiotherapy and a personalized neopeptide vaccine targeting somatic mutations, including EGFR exon 19 deletion.

    • Maise Al Bakir
    • James L. Reading
    • Charles Swanton
    ResearchOpen Access
    Nature
    Volume: 639, P: 1052-1059
  • The transcription factor ATF6 causes an enrichment in long-chain fatty acids in the colonic epithelium, which leads to changes in the gut microbiota and contributes to the development of colorectal cancer in humans and mice, thereby linking endoplasmic reticulum stress responses to lipid metabolism and tumorigenesis.

    • Olivia I. Coleman
    • Adam Sorbie
    • Dirk Haller
    ResearchOpen Access
    Nature Metabolism
    Volume: 7, P: 1830-1850
  • Interactions with the extracellular matrix (ECM) control tumor proliferation, invasion and metastasis. Here, authors provide spatial information on ECM organization and how it influences tumor cell invasive and metastasis properties through induction of cytoskeletal and transcriptional memory.

    • Oscar Maiques
    • Marta C. Sallan
    • Victoria Sanz-Moreno
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-23
  • Direct stereoselective amination of tertiary C–H bonds without the assistance of directing groups is a challenging task in synthetic organic chemistry. Now a nitrene transferase is engineered to aminate tertiary C–H bonds with high enantioselectivity, providing direct access to valuable chiral α-tertiary primary amines.

    • Runze Mao
    • Shilong Gao
    • Frances H. Arnold
    Research
    Nature Catalysis
    Volume: 7, P: 585-592
  • Circulating tumour DNA profiling in early-stage non-small-cell lung cancer can be used to track single-nucleotide variants in plasma to predict lung cancer relapse and identify tumour subclones involved in the metastatic process.

    • Christopher Abbosh
    • Nicolai J. Birkbak
    • Charles Swanton
    Research
    Nature
    Volume: 545, P: 446-451
  • HIV vaccine development can be aided by knowledge of correlates of protection. Here the authors identify engagement and reprogramming of tolerogenic CD14+ myeloid cells mediating a spatiotemporal balance of pro- and anti-inflammatory responses, as correlates of efficacy in female macaques vaccinated with the DNA/ALVAC/gp120/Alum platform.

    • Massimiliano Bissa
    • Sohyoung Kim
    • Genoveffa Franchini
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19
  • The role of viral Fc-gamma receptors in rhesus cytomegalovirus (RhCMV) infection is unclear. Here, the authors characterized RhCMV vFcγRs and report that their deletion did not affect virus replication, tropism or superinfection in rhesus macaques but increased susceptibility of the virus to antibody control.

    • Claire E. Otero
    • Sophia Petkova
    • Philipp Kolb
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • This study reports the development and preclinical evaluation of a humanized citrullinated histone H3 (CitH3) monoclonal antibody that mitigates inflammation, restores macrophage function, and protects against sepsis-induced pulmonary injury.

    • Wenlu Ouyang
    • Yuchen Chen
    • Jianjie Ma
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Advances in bionanotechnology demand an increased portfolio of assemblies beyond those currently available. Here, the authors design a crystallographically characterized super-helical sequence composed of single heptad repeats which, through derivatisation, offers vast potential applications.

    • Sudipta Mondal
    • Lihi Adler-Abramovich
    • Ehud Gazit
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-8
  • Species coexistence can be explained by the competition–colonization trade-off theory. Here, Livingston et al. illustrate this theory in a metacommunity experiment using two bacterial strains, finding a negative correlation between diversity and productivity when scaled to full metacommunities.

    • George Livingston
    • Miguel Matias
    • Nicolas Mouquet
    Research
    Nature Communications
    Volume: 3, P: 1-8
  • Analyses of multiregional tumour samples from 421 patients with non-small cell lung cancer prospectively enrolled to the TRACERx study reveal determinants of tumour evolution and relationships between intratumour heterogeneity and clinical outcome.

    • Alexander M. Frankell
    • Michelle Dietzen
    • Charles Swanton
    ResearchOpen Access
    Nature
    Volume: 616, P: 525-533
  • Current proteolysis-targeting chimeras can promote the ubiquitination and subsequent degradation of both target and off-target proteins by inducing their respective proximity with the cereblon ubiquitin ligase. Now, by developing and deploying an off-target profiling platform, ‘bumped proteolysis-targeting chimeras’ can maintain on-target degradation efficacy with reduced off-targets.

    • Tuan M. Nguyen
    • Vedagopuram Sreekanth
    • Amit Choudhary
    Research
    Nature Chemistry
    Volume: 16, P: 218-228
  • CaST is a Ca2+-activated version of split-TurboID. The tool allows labeling active neurons quickly, simply by administration of exogenous biotin, thus enabling the study of behaviors that would be impaired by hardware required for the use of other, light-dependent tools.

    • Run Zhang
    • Maribel Anguiano
    • Christina K. Kim
    ResearchOpen Access
    Nature Methods
    Volume: 21, P: 1725-1735
  • Patients with chronic lung disease (CLD) have an increased risk for severe coronavirus disease-19 and poor outcomes. Here the authors compare the transcriptomes of single cells isolated from healthy and CLD lungs to identify molecular characteristics of lung cells that may account for worse COVID-19 outcomes in these patients.

    • Linh T. Bui
    • Nichelle I. Winters
    • Laure Emmanuelle Zaragosi
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Mutations in glucocerebrosidase (GCase) cause the lysosomal storage disorder Gaucher’s disease and are the most common risk factor for Parkinson’s disease. Using a fusion protein comprising GCase and a transferrin receptor antibody fragment, the authors show that the transferrin receptor pathway can be therapeutically exploited to both pass the blood-brain barrier and efficiently target lysosomal GCase deficiency.

    • Alexandra Gehrlein
    • Vinod Udayar
    • Ravi Jagasia
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-21
  • Defective insulin secretion is observed early in the development of diabetes. Here the authors report that β cell-specific deficiency of the insulin prohormone convertase 1/3 (PC1/3) leads not only to hyperglycemia, but also to hyperphagic obesity in mice.

    • Daniel T. Meier
    • Leila Rachid
    • Marc Y. Donath
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-13
  • In mice, a strong aversive experience drives offline ensemble reactivation of not only the recent aversive memory but also a neutral memory formed 2 days before, linking fear of the recent aversive memory to the previous neutral memory.

    • Yosif Zaki
    • Zachary T. Pennington
    • Denise J. Cai
    ResearchOpen Access
    Nature
    Volume: 637, P: 145-155
  • The fibupeptide lugdunin has shown activity against antibiotic-resistant bacteria. Here, authors disclose its mechanism of action in lipid membranes and demonstrate that it assembles into nanotubes facilitating the translocation of monovalent cations.

    • Dominik Ruppelt
    • Marius F. W. Trollmann
    • Claudia Steinem
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • Immune lymphocyte estimation from nucleotide sequencing (ImmuneLENS) infers B cell and T cell fractions from whole-genome sequencing data. Applied to the 100,000 Genomes Project datasets, circulating T cell fraction provides sex-dependent and prognostic insights in patients.

    • Robert Bentham
    • Thomas P. Jones
    • Nicholas McGranahan
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 694-705
  • Single-cell Proliferation Rate Inference in Non-homogeneous Tumors through Evolutionary Routes (SPRINTER) allows users to infer proliferation rates of individual clones within a tumor from single-cell DNA sequencing data. Applying SPRINTER to human tumor datasets highlighted a link between proliferation and metastatic potential.

    • Olivia Lucas
    • Sophia Ward
    • Simone Zaccaria
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 103-114
  • Metabolism of oxidized sugars during inflammation has been implicated as a pathogen colonization factor. Here, the authors characterize oxidized sugar utilization pathways in commensal bacteria, identifying genes essential for oxidized sugar utilization in the commensal E. clostridioformis, where GarABC and GudL can functionally replace GudP and GarL in pathogenic E. coli.

    • Sophia Levy
    • Angela K. Jiang
    • Brantley Hall
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • In patients with Crohn’s disease, CD4+ T cells with cytotoxic TH1 cell-like effector functions reactive against dietary and commensal yeasts are increased in blood and inflamed tissue compared with patients with ulcerative colitis and healthy controls.

    • Gabriela Rios Martini
    • Ekaterina Tikhonova
    • Petra Bacher
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 2602-2614
  • The mycobacterial ABC transporter IrtAB functions as a siderophore importer despite exhibiting an exporter fold in its structure, and contains a siderophore interaction domain capable of siderophore reduction and iron release inside the cell.

    • Fabian M. Arnold
    • Miriam S. Weber
    • Markus A. Seeger
    Research
    Nature
    Volume: 580, P: 413-417
  • Analyses of the TRACERx study unveil the relationship between tissue morphology, the underlying evolutionary genomic landscape, and clinical and anatomical relapse risk of lung adenocarcinomas.

    • Takahiro Karasaki
    • David A. Moore
    • Mariam Jamal-Hanjani
    Research
    Nature Medicine
    Volume: 29, P: 833-845