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Showing 1–50 of 201 results
Advanced filters: Author: Yu Taniguchi Clear advanced filters
  • The quantitative relationship between the fluctuation of specific extrinsic and intrinsic factors, and stochastic fluctuations in gene expression - or noise - has not been clearly established. Here, Yang et al.demonstrate that intrinsic noise is independent of - while extrinsic noise scales linearly with - variation in RNA polymerase abundance.

    • Sora Yang
    • Seunghyeon Kim
    • Nam Ki Lee
    Research
    Nature Communications
    Volume: 5, P: 1-9
  • Recently, a Luttinger liquid state was reported in a moiré superlattice of bilayer tungsten ditelluride at small twist angles and temperatures of a few kelvins. Here, the authors extend this result to millikelvin temperatures, supporting the existence of the 2D anisotropic Luttinger liquid as a stable ground state.

    • Guo Yu
    • Pengjie Wang
    • Sanfeng Wu
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-8
  • Twisted van der Waals structures represent a versatile platform to investigate topological and correlated electronic states. Here, the authors report the visualization of an electron crystal phase in twisted monolayer-bilayer graphene via scanning tunnelling microscopy, studying the coupling between strong electron correlation and nontrivial band topology.

    • Si-yu Li
    • Zhengwen Wang
    • Jinhai Mao
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-7
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • The absence of a bandgap in the electronic spectrum of graphene can be overcome by breaking its lattice symmetry. The authors show that the insulating state of gapped graphene is electrically shorted by narrow edge channels exhibiting high conductivity.

    • M. J. Zhu
    • A. V. Kretinin
    • M. Ben Shalom
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-6
  • Precise control of the relative orientation of two two-dimensional layers enables reproducible fabrication of heterostructure devices. Here, the authors show that graphene rotates towards the crystallographic direction of a boron-nitride substrate due to the interplay between van der Waals and elastic energies.

    • C. R. Woods
    • F. Withers
    • K. S. Novoselov
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-5
  • Van der Waals heterostructures offer a platform for harnessing the spin-valley degree of freedom for information processing. Here, the authors transfer optically generated spin-valley polarization from one layer to another in a two-dimensional molybdenum diselenide–tungsten diselenide heterostructure.

    • John R. Schaibley
    • Pasqual Rivera
    • Xiaodong Xu
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-6
  • A single layer of graphene on top of a hexagonal boron-nitride sheet can stretch to form a commensurate structure, or not — depending on the rotation angle between the two layers. In the case of commensurability, strain gets concentrated in domain walls, resulting in soliton-like structures.

    • C. R. Woods
    • L. Britnell
    • K. S. Novoselov
    Research
    Nature Physics
    Volume: 10, P: 451-456
  • Designing large-scale crossbar arrays for energy efficient neuromorphic computing systems remains a challenge. Here, the authors propose Van der Waals (h-BN/graphene/h-BN) self-selective memory design able to combine, in the same cell, non-volatile and volatile behaviors with negligible sneak current.

    • Linfeng Sun
    • Yishu Zhang
    • Heejun Yang
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-7
  • Graphene on boron nitride gives rise to a moiré superlattice displaying the Hofstadter butterfly: a fractal dependence of energy bands on external magnetic fields. Now, by means of capacitance spectroscopy, further aspects of this system are revealed—most notably, suppression of quantum Hall antiferromagnetism at particular commensurate magnetic fluxes.

    • G. L. Yu
    • R. V. Gorbachev
    • A. Mishchenko
    Research
    Nature Physics
    Volume: 10, P: 525-529
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • The authors present electrical transport-based evidence of generalized Wigner crystal states in twisted bilayer MoSe2 at fractional electron fillings ν = 2/5, 1/2, 3/5, 2/3, 8/9, 10/9, and 4/3, together with a Mott state at ν = 1. They further demonstrate continuous quantum melting transitions in a multi-parameter space of electron density, displacement and magnetic fields.

    • Qi Jun Zong
    • Haolin Wang
    • Lei Wang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-8
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Boron-containing drug candidates have garnered increasing attention due to their pharmacological properties and application in boron neutron capture therapy. Here, the authors report a transition metal-free anti-addition of pinacolborane to alkynes, facilitated by the counteranion effect for the facile construction of bora-butenolide bioisosteres.

    • Yuan-Wen Liu
    • Yu Liu
    • Hongming Jin
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Transition metal dichalcogenides exhibit diverse and tunable electronic states. Here the authors reveal a cascade of phase transitions upon increasing hydrostatic pressure in the few-layer 1T-WS2, including a re-entrant superconducting phase emerging from a normal state exhibiting anomalous Hall effect.

    • Md Shafayat Hossain
    • Qi Zhang
    • M. Zahid Hasan
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • Stereochemical control of acyclic carbon radical intermediates remains a challenge, due to the difficulty in differentiation between the two faces of the planar species. Here the authors show diastereodivergent hydrogen atom transfer to acyclic carbon radicals via control of N-heterocyclic carbene–borane reagents with either a thiol catalyst or a Lewis acid.

    • Tian Ye
    • Feng-Lian Zhang
    • Yi-Feng Wang
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • The dynamical axion quasiparticle, which is directly analogous to the hypothetical fundamental axion particle, is observed in two-dimensional MnBi2Te4, and has implications for quantum chromodynamics, cosmology and string theory.

    • Jian-Xiang Qiu
    • Barun Ghosh
    • Su-Yang Xu
    Research
    Nature
    Volume: 641, P: 62-69
  • Γ and K valleys in twisted transition metal dichalcogenides have emerged as highly tunable knobs for accessing different correlated electronic states in solid-state devices. Here, the authors tune a Mott-Hubbard state to a charge-transfer insulator state in twisted double-bilayer WSe2.

    • LingNan Wei
    • Qingxin Li
    • Lei Wang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-7
  • Alveolar macrophages represent a cell type that is physiologic to the lung immune landscape, however, it is not known whether they play an active role to maintain the tumour immune microenvironment. Here authors show by single cell RNA sequencing and functional experiments, that intra-tumour alveolar macrophages are phenotypically and transcriptionally different from the healthy ones, and likely play an aetio-pathologic role in tumorigenesis.

    • Seiji Taniguchi
    • Takahiro Matsui
    • Masaru Ishii
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-14
  • Memory effect is seldom found in ferroic domains after reversible phase transformations. Here, the authors develop a pair of single-component organic enantiomorphic multiferroic crystals with erasable ferroelectric and ferroelastic domains.

    • Zhong-Xia Wang
    • Xiao-Gang Chen
    • Ren-Gen Xiong
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-6
  • In the observational SCRUM-Japan GOZILA study, after a median follow-up of 11 months, patients with metastatic gastrointestinal tumors who received biomarker-matched therapies based on circulating tumor DNA profiling showed a greater clinical benefit than those receiving unmatched therapy.

    • Yoshiaki Nakamura
    • Hiroshi Ozaki
    • Takayuki Yoshino
    ResearchOpen Access
    Nature Medicine
    Volume: 31, P: 165-175