Abstract
Poly (ADP-ribose) polymerase 1 (PARP1) is overexpressed in a variety of cancers, especially in breast and ovarian cancers; tumor cells that are deficient in breast cancer gene 1/2 (BRCA1/2) are highly sensitive to PARP1 inhibition. In this study, we identified a series of 2,4-difluorophenyl-linker analogs (15–55) derived from olaparib as novel PARP1 inhibitors. Four potent analogs 17, 43, 47, and 50 (IC50=2.2–4.4 nmol/L) effectively inhibited the proliferation of Chinese hamster lung fibroblast V-C8 cells (IC50=3.2–37.6 nmol/L) in vitro, and showed specificity toward BRCA-deficient cells (SI=40–510). The corresponding hydrochloride salts 56 and 57 (based on 43 and 47) were highly water soluble in pH=1.0 buffered salt solutions (1628.2 μg/mL, 2652.5 μg/mL). In a BRCA1-mutated xenograft model, oral administration of compound 56 (30 mg·kg-1·d-1, for 21 d) exhibited more prominent tumor growth inhibition (96.6%) compared with the same dose of olaparib (56.3%); in a BRCA2-mutated xenograft model, oral administration of analog 43 (10 mg·kg-1·d-1, for 28 d) significantly inhibited tumor growth (69.0%) and had no negative effects on the body weights. Additionally, compound 56 exhibited good oral bioavailability (F=32.2%), similar to that of olaparib (F=45.4%). Furthermore, the free base 43 of the hydrochloride salt 56 exhibited minimal hERG inhibition activity (IC50=6.64 μmol/L). Collectively, these data demonstrate that compound 56 may be an excellent drug candidate for the treatment of cancer, particularly BRCA-deficient tumors.
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References
He JX, Yang CH, Miao ZH . Poly(ADP-ribose) polymerase inhibitors as promising cancer therapeutics. Acta Pharmacol Sin 2010; 31: 1172–80.
Wang YQ, Wang PY, Wang YT, Yang GF, Zhang A, Miao ZH . An update on poly(adp-ribose)polymerase-1 (PARP-1) inhibitors: opportunities and challenges in cancer therapy. J Med Chem 2016; 59: 9575–98.
Burkle A . Poly (ADP-ribose). The most elaborate metabolite of NAD+. FEBS J 2005; 272: 4576–89.
Krishnakumar R, Kraus WL . The PARP side of the nucleus: molecular actions, physiological outcomes, and clinical targets. Mol Cell 2010; 39: 8–24.
Hassa PO, Hottiger MO . The diverse biological roles of mammalian PARPS, a small but powerful family of poly-ADP-ribose polymerases. Front Biosci 2008; 13: 3046–82.
Rouleau M, Patel A, Hendzel MJ, Kaufmann SH, Poirier GG . PARP inhibition: PARP1 and beyond. Nat Rev Cancer 2010; 10: 293–301.
Curtin NJ, Szabo C . Therapeutic applications of PARP inhibitors: anticancer therapy and beyond. Mol Aspects Med 2013; 34: 1217–56.
Yélamos J, Schreiber V, Dantzer F . Toward specific functions of poly(ADP-ribose) polymerase-2. Trends Mol Med 2008; 14: 169–78.
Yelamos J, Farres J, Llacuna L, Ampurdanes C, Martin-Caballero J . PARP-1 and PARP-2: New players in tumour development. Am J Cancer Res 2011; 1: 328–46.
Sandhu SK, Yap TA, de Bono JS . Poly(ADP-ribose) polymerase inhibitors in cancer treatment: a clinical perspective. Eur J Cancer 2010; 46: 9–20.
Langelier MF, Servent KM, Rogers EE, Pascal JM . A third zinc-binding domain of human poly(ADP-ribose) polymerase-1 coordinates DNA-dependent enzyme activation. J Biol Chem 2008; 283: 4105–14.
Langelier MF, Ruhl DD, Planck JL, Kraus WL, Pascal JM . The Zn3 domain of human poly(ADP-ribose) polymerase-1 (PARP-1) functions in both DNA-dependent poly(ADP-ribose) synthesis activity and chromatin compaction. J Biol Chem 2010; 285: 18877–87.
Wang Q . Cancer predisposition genes: molecular mechanisms and clinical impact on personalized cancer care: examples of Lynch and HBOC syndromes. Acta Pharmacol Sin 2016; 37: 143–9.
Schreiber V, Dantzer F, Ame JC, de Murcia G . Poly(ADP-ribose): novel functions for an old molecule. Nat Rev Mol Cell Biol 2006; 7: 517–28.
Peralta-Leal A, Rodríguez MI, Oliver FJ . Poly(ADP-ribose)polymerase-1 (PARP-1) in carcinogenesis: potential role of PARP inhibitors in cancer treatment. Clin Transl Oncol 2008; 10: 318–23.
Ferraris DV . Evolution of poly (ADP-ribose) polymerase-1 (PARP-1) inhibitors. From concept to clinic. J Med Chem 2010; 53: 4561–84.
Amir E, Seruga B, Serrano R, Ocana A . Targeting DNA repair in breast cancer: a clinical and translational update. Cancer Treat Rev 2010; 36: 557–65.
Heitz F, Harter P, Ewald-Riegler N, Papsdorf M, Kommoss S, du Bois A . Poly(ADP-ribosyl)ation polymerases: mechanism and new target of anticancer therapy. Expert Rev Anticancer Ther 2010; 10: 1125–36.
Glendenning J, Tutt A . PARP inhibitors–current status and the walk towards early breast cancer. Breast 2011; 20: S12–9.
Wang Z, Wang F, Tang T, Guo C . The role of PARP1 in the DNA damage response and its application in tumor therapy. Front Med 2012; 6: 156–64.
Basu B, Yap TA, Molife LR, de Bono JS . Targeting the DNA damage response in oncology: past, present and future perspectives. Curr Opin Oncol 2012; 24: 316–24.
De Vos M, Schreiber V, Dantzer F . The diverse roles and clinical relevance of PARPs in DNA damage repair: current state of the art. Biochem Pharmacol 2012; 84: 137–46.
Kummar S, Chen A, Parchment RE, Kinders RJ, Ji J, Tomaszewski JE, et al. Advances in using PARP inhibitors to treat cancer. BMC Med 2012; 10: 25.
Ekblad T, Camaioni E, Schüler H, Macchiarulo A . PARP inhibitors: polypharmacology versus selective inhibition. FEBS J 2013; 280: 3563–75.
Lupo B, Trusolino L . Inhibition of poly(ADP-ribosyl)ation in cancer: old and new paradigms revisited. Biochim Biophys Acta Rev Cancer 2014; 1846: 201–15.
Menear KA, Adcock C, Boulter R, Cockcroft X, Copsey L, Cranston A, et al. 4-[3-(4-cyclopropanecarbonylpiperazine-1-carbonyl)-4-fluorobenzyl]-2H- phthalazin-1-one: A novel bioavailable inhibitor of poly (ADP-ribose) polymerase-1. J Med Chem 2008; 51: 6581–91.
Thomas HD, Calabrese CR, Batey MA, Canan S, Hostomsky Z, Kyle S, et al. Preclinical selection of a novel poly (ADP-ribose) polymerase inhibitor for clinical trial. Mol Cancer Ther 2007; 6: 945–56.
Canan-Koch SS, Thoresen LH, Tikhe JG, Maegley KA, Yu XH, Zook SE, et al. Novel tricyclic poly(ADP-ribose) polymerase-1 inhibitors with potentanticancer chemopotentiating activity: Design, synthesis, and X-ray cocrystal structure. J Med Chem 2002; 45: 4961–74.
Jones P, Altamura S, Boueres J, Ferrigno F, Fonsi M, Giomini C, et al. Discovery of 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole- 7-carboxamide (MK-4827): A novel oral poly(ADP-ribose) polymerase (PARP) inhibitor efficacious in BRCA-1 and -2 mutant tumors. J Med Chem 2009; 52: 7170–85.
Jones P, Wilcoxen K, Rowley M, Toniatti C . Niraparib: a poly (ADP-ribose) polymerase (PARP) inhibitor for the treatment of tumors with defective homologous recombination. J Med Chem 2015; 58: 3302–14.
Donawho CK, Luo Y, Luo Y, Penning TD, Bauch JL, Bouska JJ, et al. ABT-888, an orally active poly(ADP-ribose) polymerase inhibitor that potentiates DNA-damaging agents in preclinical tumor models. Clin Cancer Res 2007; 13: 2728–37.
Penning TD, Zhu GD, Gandhi VB, Gong J, Thomas S, Lubisch W, et al. Discovery and SAR of 2-(1-propylpiperidin-4-yl)-1H-benzimidazole- 4-carbox-amide: A potent inhibitor of poly (ADP-ribose) polymerase (PARP) for the treatment of cancer. Bioorg Med Chem 2008; 16: 6965–75.
Shen Y, Rehman FL, Feng Y, Boshuizen J, Bajrami I, Elliott R, et al. BMN 673, a novel and highly potent PARP1/2 inhibitor for the treatment of human cancers with DNA repair deficiency. Clin Cancer Res 2013; 19: 5003–15.
Böhm HJ, Banner D, Bendels S, Kansy M, Kuhn B, Müller K, et al. Fluorine in medicinal chemistry. ChemBioChem 2004; 5: 637–43.
O'Hagan D . Understanding organofluorine chemistry. An introduction to the C-F bond. Chem Soc Rev 2008; 37: 308–19.
Hunter L . The C–F bond as a conformational tool in organic and biological chemistry. Beilstein J Org Chem 2010; 6: 38.
Shah P, Westwell AD . The role of fluorine in medicinal chemistry. J Enzyme Inhib Med Chem 2007; 22: 527–40.
Eastman KJ, Gillis EP, Meanwell NA . Tactical applications of fluorine in drug design and development. Fluorine in Heterocyclic Chemistry, Volume 1, 5-Membered Heterocycles and Macrocycles; Nenajdenko V. Ed.; Springer International: Cham, Switzerland, 2014; 1–54.
Meanwell NA . Improving drug candidates by design: a focus on physicochemical properties as a means of improving compound disposition and safety. Chem Res Toxicol 2011; 24: 1420–56.
Hopkins AL, Keserü GM, Leeson PD, Rees DC, Reynolds CH . The role of ligand efficiency metrics in drug discovery. Nat Rev Drug Discov 2014; 13: 105–21.
Ritchie TJ, Macdonald SJF . How drug-like are “ugly” drugs: do drug-likeness metrics predict ADME behaviour in humans? Drug Discov Today 2014; 19: 489–95.
Wager TT, Kormos BL, Brady JT, Will Y, Aleo MD, Stedman DB, et al. Improving the odds of success in drug discovery: choosing the best compounds for in vivo toxicology studies. J Med Chem 2013; 56: 9771–9.
Tarcsay A, Keserú GM . Contributions of molecular properties to drug promiscuity. J Med Chem 2013; 56: 1789–95.
Yusof I, Segall MD . Considering the impact drug-like properties have on the chance of success. Drug Discov Today 2013; 18: 659–66.
Ye N, Chen CH, Chen T, Song Z, He JX . Huan XJ et al. Design, synthesis, and biological evaluation of a series of benzo[de][1,7] naphthyridin-7(8H)-ones bearing a functionalized longer chain appendage as novel PARP1 inhibitors. J Med Chem 2013; 56: 2885–903.
Yuan B, Ye N, Song SS, Wang YT, Song Z, Chen HD, et al. Poly(ADPribose)polymerase (PARP) inhibition and anticancer activity of simmiparib, a new inhibitor undergoing clinical trials. Cancer Lett 2017; 386: 47–56.
He JX, Wang M, Huan XJ, Chen CH, Song SS, Wang YQ, et al. Novel PARP1/2 inhibitor mefuparib hydrochloride elicits potent in vitro and in vivo anticancer activity characteristic of high tissue distribution. Oncotarget 2017; 8: 4156–68.
Yang ZM, Liao XM, Chen Y, Shen YY, Yang XY, Su Y, et al. Combining 53BP1 with BRCA1 as a biomarker to predict the sensitivity of poly(ADP-ribose) polymerase (PARP) inhibitors. Acta Pharmacol Sin 2017; doi: 10.1038/aps.2017.8.
Acknowledgements
Financial support of this research was provided by the National Natural Science Foundation of China (Grants 21672064, 8152200403 and 21372001), the “Shu Guang” Project supported by the Shanghai Municipal Education Commission and the Shanghai Education Development Foundation (Grant 14SG28), the Science and Technology Commission of Shanghai Municipality (No 15431901200), and the Fundamental Research Funds for the Central Universities.
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Chen, Wh., Song, Ss., Qi, Mh. et al. Discovery of potent 2,4-difluoro-linker poly(ADP-ribose) polymerase 1 inhibitors with enhanced water solubility and in vivo anticancer efficacy. Acta Pharmacol Sin 38, 1521–1532 (2017). https://doi.org/10.1038/aps.2017.104
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DOI: https://doi.org/10.1038/aps.2017.104
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