Abstract
We used exome sequencing to study a non-consanguineous family with two children who had anterior segment dysgenesis, sclerocornea, microphthalmia, hypotonia and developmental delays. Sanger sequencing verified two Peroxidasin (PXDN) mutations in both sibs—a maternally inherited, nonsense mutation, c.1021C>T predicting p.(Arg341*), and a paternally inherited, 23-basepair deletion causing a frameshift and premature protein truncation, c.2375_2397del23, predicting p.(Leu792Hisfs*67). We re-examined exome data from 20 other patients with structural eye defects and identified two additional PXDN mutations in a sporadic male with bilateral microphthalmia, cataracts and anterior segment dysgenesis—a maternally inherited, frameshift mutation, c.1192delT, predicting p.(Tyr398Thrfs*40) and a paternally inherited, missense substitution that was predicted to be deleterious, c.947 A>C, predicting p.(Gln316Pro). Mutations in PXDN were previously reported in three families with congenital cataracts, microcornea, sclerocornea and developmental glaucoma. The gene is expressed in corneal epithelium and is secreted into the extracellular matrix. Defective peroxidasin has been shown to impair sulfilimine bond formation in collagen IV, a constituent of the basement membrane, implying that the eye defects result because of loss of basement membrane integrity in the developing eye. Our finding of a broader phenotype than previously appreciated for PXDN mutations is typical for exome-sequencing studies, which have proven to be highly effective for mutation detection in patients with atypical presentations. We conclude that PXDN sequencing should be considered in microphthalmia with anterior segment dysgenesis.
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References
Fantes J, Ragge NK, Lynch SA et al: Mutations in SOX2 cause anophthalmia. Nat Genet 2003; 33: 461–463.
Schneider A, Bardakjian T, Reis LM, Tyler RC, Semina EV : Novel SOX2 mutations and genotype phenotype correlation in anophthalmia and microphthalmia. Am J Med Genet A 2009; 149A: 2706–2715.
Verma AS, Fitzpatrick DR : Anophthalmia and microphthalmia. Orphanet J Rare Dis 2009; 2: 47.
Bardakjian T, Weiss A, Schneider AS : Anophthalmia/microphthalmia overview; in Pagon RA, Adam MP, Ardinger HH, Bird TD, Dolan CR, Fong CT, Smith RJH, Stephens K, (eds): GeneReviews® [Internet]., Seattle (WA): University of Washington, Seattle 1993–2014.
Slavotinek AM : Eye development genes and known syndromes. Mol Genet Metab 2011; 104: 448–456.
Slavotinek AM, Chao R, Vacik T et al: VAX1 mutation associated with microphthalmia, corpus callosum agenesis, and orofacial clefting: the first description of a VAX1 phenotype in humans. Hum Mutat 2011; 33: 364–368.
Yahyavi M, Abouzeid H, Gawdat G et al: ALDH1A3 loss of function causes bilateral anophthalmia/microphthalmia and hypoplasia of the optic nerve and optic chiasm. Hum Mol Genet 2013; 2: 3250–3258.
Aldahmesh MA, Khan AO, Hijazi H, Alkuraya FS : Homozygous truncation of SIX6 causes complex microphthalmia in humans. Clin Genet 2013; 84: 198–199.
Reis LM, Semina EV : Genetics of anterior segment dysgenesis disorders. Curr Opin Ophthalmol 2011; 22: 314–324.
D'haene B, Meire F, Claerhout I et al: Expanding the spectrum of FOXC1 and PITX2 mutations and copy number changes in patients with anterior segment malformations. Invest Ophthalmol Vis Sci 2011; 52: 324–333.
Reis LM, Tyler RC, Volkmann Kloss BA et al: PITX2 and FOXC1 spectrum of mutations in ocular syndromes. Eur J Hum Genet 2012; 20: 1224–1233.
Semina EV, Brownell I, Mintz-Hittner HA et al: Mutations in the human forkhead transcription factor FOXE3 associated with anterior segment ocular dysgenesis and cataracts. Hum Mol Genet 2001; 10: 231–236.
Ali M, Buentello-Volante B, McKibbin M et al: Homozygous FOXE3 mutations cause non-syndromic, bilateral, total sclerocornea, aphakia, microphthalmia and optic disc coloboma. Mol Vis 2010; 16: 1162–1168.
Doucette L, Green J, Fernandez B et al: A novel, non-stop mutation in FOXE3 causes an autosomal dominant form of variable anterior segment dysgenesis including Peters anomaly. Eur J Hum Genet 2011; 9: 293–299.
Semina EV, Ferrell RE, Mintz-Hittner HA et al: A novel homeobox gene PITX3 is mutated in families with autosomal-dominant cataracts and ASMD. Nat Genet 1998; 19: 167–170.
Jamieson RV, Perveen R, Kerr B et al: Domain disruption and mutation of the bZIP transcription factor, MAF, associated with cataract, ocular anterior segment dysgenesis and coloboma. Hum Mol Genet 2002; 11: 33–42.
Weng J, Luo J, Cheng X et al: Deletion of G protein-coupled receptor 48 leads to ocular anterior segment dysgenesis (ASD) through down-regulation of Pitx2. Proc Natl Acad Sci USA 2008; 105: 6081–6086.
Mao M, Solivan-Timpe F, Roos BR et al: Localization of SH3PXD2B in human eyes and detection of rare variants in patients with anterior segment diseases and glaucoma. Mol Vis 2012; 18: 705–713.
Alzuhairy S, Abu-Amero KK, Al-Shahwan S, Edward DP : A novel CYP1B1 mutation with congenital glaucoma and total aniridia. Ophthalmic Genet 2013; 3: (epub ahead of print).
Bamshad MJ, Ng SB, Bigham AW et al: Exome sequencing as a tool for Mendelian disease gene discovery. Nat Rev Genet 2011; 12: 745–755.
Slavotinek AM, Mehrotra P, Nazarenko I et al: Focal facial dermal dysplasia, type IV, is caused by mutations in CYP26C1. Hum Mol Genet 2013; 22: 696–703.
Wang K, Li M, Hakonarson H : ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010; 38: e164.
Chang X, Wang K : wANNOVAR: annotating genetic variants for personal genomes via the web. J Med Genet 2012; 49: 433–436.
Schwarz JM, Rödelsperger C, Schuelke M, Seelow D : MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods 2010; 7: 575–576.
Croen LA, Shaw GM, Jensvold NG, Harris JA : Birth defects monitoring in California: a resource for epidemiological research. Paediatr Perinat Epidemiol 1991; 5: 423–427.
Khan K, Rudkin A, Parry DA et al: Homozygous mutations in PXDN cause congenital cataract, corneal opacity, and developmental glaucoma. Am J Hum Genet 2011; 89: 464–473.
Liu Y, Carson-Walter EB, Cooper A et al: Vascular gene expression patterns are conserved in primary and metastatic brain tumors. J Neurooncol 2010; 99: 13–24.
Mitchell MS, Kan-Mitchell J, Minev B et al: A novel melanoma gene (MG50) encoding the interleukin 1 receptor antagonist and six epitopes recognized by human cytolytic T lymphocytes. Cancer Res 2000; 60: 6448–6456.
Castronovo V, Waltregny D, Kischel P et al: A chemical proteomics approach for the identification of accessible antigens expressed in human kidney cancer. Mol Cell Proteomics 2006; 5: 2083–2091.
Bhave G, Cummings CF, Vanacore RM et al: Peroxidasin forms sulfilimine chemical bonds using hypohalous acids in tissue genesis. Nat Chem Biol 2012; 8: 784–790.
Van Agtmael T, Schlötzer-Schrehardt U, McKie L et al: Dominant mutations of Col4a1 result in basement membrane defects which lead to anterior segment dysgenesis and glomerulopathy. Hum Mol Genet 2005; 14: 3161–3168.
Gould DB, Marchant JK, Savinova OV et al: Col4a1 mutation causes endoplasmic reticulum stress and genetically modifiable ocular dysgenesis. Hum Mol Genet 2007; 16: 798–807.
Labelle-Dumais C, Dilworth DJ, Harrington EP et al: COL4A1 mutations cause ocular dysgenesis, neuronal localization defects, and myopathy in mice and Walker-Warburg syndrome in humans. PLoS Genet 2011; 7: e1002062.
Kuo DS, Labelle-Dumais C, Gould DB : COL4A1 and COL4A2 mutations and disease: insights into pathogenic mechanisms and potential therapeutic targets. Hum Mol Genet 2012; 21: R97–110.
Meyer KJ, Axelsen MS, Sheffield VC et al: Germline mosaic transmission of a novel duplication of PXDN and MYT1L to two male half-siblings with autism. Psychiatr Genet 2012; 22: 137–140.
Lee Y, Mattai A, Long R et al: Microduplications disrupting the MYT1L gene (2p25.3) are associated with schizophrenia. Psychiatr Genet 2012; 22: 206–209.
Acknowledgements
We are grateful to the families for their participation. This work was supported by grant R21EY022779-01 to Dr Anne Slavotinek from the National Eye Institute, National Institutes of Health. We thank the California Department of Public Health Maternal Child and Adolescent Health Division for providing data for some analyses. The findings and conclusions in this report are those of the authors and do not necessarily represent the view of the California Department of Public Health.
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Choi, A., Lao, R., Ling-Fung Tang, P. et al. Novel mutations in PXDN cause microphthalmia and anterior segment dysgenesis. Eur J Hum Genet 23, 337–341 (2015). https://doi.org/10.1038/ejhg.2014.119
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DOI: https://doi.org/10.1038/ejhg.2014.119


