Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Original Article
  • Published:

Copy number variation in the CCL4L gene is associated with susceptibility to acute rejection in lung transplantation

Abstract

Lung transplantation (LT) has become an accepted therapy for selected patients with advanced lung disease. One of the main limitations to successful LT is rejection of the transplanted organ where chemokines are pivotal mediators. Here, we test the relationship between copy number variation (CNV) in the CCL4L chemokine gene and rejection risk in LT patients (n=161). Patients with no acute rejection showed a significantly lower mean number of CCL4L copies than patients that showed acute rejection (1.66 vs 1.96, P=0.014), with an even greater number of gene copies seen in patients with more than one episode of acute rejection (1.66 vs 2.30, P=0.001). Additionally, patients with 2 CCL4L copies had a significantly higher risk of acute rejection compared with patients that had 0–1 CCL4L copies (odds ratio 2.65; 95% confidence interval, 1.33–5.28; P=0.0046). A combined analysis of CCL4L CNV and the rs4796195 CCL4L single nucleotide polymorphism demonstrated that the effect of CCL4L copy number in acute rejection is mainly because of the number of copies of the CCL4L1 allelic variant. This finding constitutes the first report of CNV as a correlate factor in allograft rejection.

This is a preview of subscription content, access via your institution

Access options

Buy this article

USD 39.95

Prices may be subject to local taxes which are calculated during checkout

Figure 1

Similar content being viewed by others

References

  1. Knoop C, Estenne M . Acute and chronic rejection after lung transplantation. Semin Respir Crit Care Med 2006; 27: 521–533.

    Article  Google Scholar 

  2. Marboe CC . Pathology of lung transplantation. Semin Diagn Pathol 2007; 24: 188–198.

    Article  Google Scholar 

  3. Burton CM, Carlsen J, Mortensen J, Andersen CB, Milman N, Iversen M . Long-term survival after lung transplantation depends on development and severity of bronchiolitis obliterans syndrome. J Heart Lung Transplant 2007; 26: 681–686.

    Article  Google Scholar 

  4. Colobran R, Pujol-Borrell R, Armengol MP, Juan M . The chemokine network. I. How the genomic organization of chemokines contains clues for deciphering their functional complexity. Clin Exp Immunol 2007; 148: 208–217.

    Article  CAS  Google Scholar 

  5. Hancock WW, Wang L, Ye Q, Han R, Lee I . Chemokines and their receptors as markers of allograft rejection and targets for immunosuppression. Curr Opin Immunol 2003; 15: 479–486.

    Article  CAS  Google Scholar 

  6. Snyder LD, Palmer SM . Immune mechanisms of lung allograft rejection. Semin Respir Crit Care Med 2006; 27: 534–543.

    Article  Google Scholar 

  7. Akalin E, Murphy B . Gene polymorphisms and transplantation. Curr Opin Immunol 2001; 13: 572–576.

    Article  CAS  Google Scholar 

  8. Krüger B, Schröppel B, Murphy BT . Genetic polymorphisms and the fate of the transplanted organ. Transplant Rev (Orlando) 2008; 22: 131–140.

    Article  Google Scholar 

  9. Marshall SE, Welsh KI . The role of cytokine polymorphisms in rejection after solid organ transplantation. Genes Immun 2001; 2: 297–303.

    Article  CAS  Google Scholar 

  10. Pawlik A, Domanski L, Rozanski J, Czerny B, Juzyszyn Z, Dutkiewicz G et al. The association between cytokine gene polymorphisms and kidney allograft survival. Ann Transplant 2008; 13: 54–58.

    PubMed  Google Scholar 

  11. Colobran R, Pujol-Borrell R, Armengol MP, Juan M . The chemokine network. II. On how polymorphisms and alternative splicing increase the number of molecular species and configure intricate patterns of disease susceptibility. Clin Exp Immunol 2007; 150: 1–12.

    Article  CAS  Google Scholar 

  12. Krüger B, Böger CA, Obed A, Farkas S, Hoffmann U, Banas B et al. RANTES/CCL5 polymorphisms as a risk factor for recurrent acute rejection. Clin Transplant 2007; 21: 385–390.

    Article  Google Scholar 

  13. Simeoni E, Vassalli G, Seydoux C, Ramsay D, Noll G, von Segesser LK et al. CCR5, RANTES and CX3CR1 polymorphisms: possible genetic links with acute heart rejection. Transplantation 2005; 80: 1309–1315.

    Article  CAS  Google Scholar 

  14. Townson JR, Barcellos LF, Nibbs RJ . Gene copy number regulates the production of the human chemokine CCL3-L1. Eur J Immunol 2002; 32: 3016–3026.

    Article  CAS  Google Scholar 

  15. Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T et al. Mapping and sequencing of structural variation from eight human genomes. Nature 2008; 453: 56–64.

    Article  CAS  Google Scholar 

  16. Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD et al. Global variation in copy number in the human genome. Nature 2006; 444: 444–454.

    Article  CAS  Google Scholar 

  17. Estivill X, Armengol L . Copy number variants and common disorders: filling the gaps and exploring complexity in genome-wide association studies. PLoS Genet 2007; 3: 1787–1799.

    Article  CAS  Google Scholar 

  18. Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N et al. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 2007; 315: 848–853.

    Article  CAS  Google Scholar 

  19. Colobran R, Adreani P, Ashhab Y, Llano A, Esté JA, Dominguez O et al. Multiple products derived from two CCL4 loci: high incidence of a new polymorphism in HIV+ patients. J Immunol 2005; 174: 5655–5664.

    Article  CAS  Google Scholar 

  20. Capoulade-Métay C, Meyer L, Tran T, Persoz A, Bourdais A, Dudoit Y et al. Influence of the R22H variant of macrophage inflammatory protein 1beta/Lag-1 in HIV-1 survival. AIDS 2005; 19: 831–833.

    Article  Google Scholar 

  21. Colobran R, Comas D, Faner R, Pedrosa E, Anglada R, Pujol-Borrell R et al. Population structure in copy number variation and SNPs in the CCL4L chemokine gene. Genes Immun 2008; 9: 279–288.

    Article  CAS  Google Scholar 

  22. Quantz MA, Bennett LE, Meyer DM, Novick RJ . Does human leukocyte antigen matching influence the outcome of lung transplantation? An analysis of 3,549 lung transplantations. J Heart Lung Transplant 2000; 19: 473–479.

    Article  CAS  Google Scholar 

  23. Sheldon S, Poulton K . HLA typing and its influence on organ transplantation. Methods Mol Biol 2006; 333: 157–174.

    CAS  PubMed  Google Scholar 

  24. Modi WS . CCL3L1 and CCL4L1 chemokine genes are located in a segmental duplication at chromosome 17q12. Genomics 2004; 83: 735–738.

    Article  CAS  Google Scholar 

  25. Shao W, Tang J, Song W, Wang C, Li Y, Wilson CM et al. CCL3L1 and CCL4L1: variable gene copy number in adolescents with and without human immunodeficiency virus type 1 (HIV-1) infection. Genes Immun 2007; 8: 224–231.

    Article  CAS  Google Scholar 

  26. Howard OM, Turpin JA, Goldman R, Modi WS . Functional redundancy of the human CCL4 and CCL4L1 chemokine genes. Biochem Biophys Res Commun 2004; 320: 927–931.

    Article  CAS  Google Scholar 

  27. Gonzalez E, Kulkarni H, Bolivar H, Mangano A, Sanchez R, Catano G et al. The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility. Science 2005; 307: 1434–1440.

    Article  CAS  Google Scholar 

  28. Melzer D, Perry JR, Hernandez D, Corsi AM, Stevens K, Rafferty I et al. A genome-wide association study identifies protein quantitative trait loci (pQTLs). PLoS Genet 2008; 4: e1000072.

    Article  Google Scholar 

  29. Belperio JA, Burdick MD, Keane MP, Xue YY, Lynch III JP, Daugherty BL et al. The role of the CC chemokine, RANTES, in acute lung allograft rejection. J Immunol 2000; 165: 461–472.

    Article  CAS  Google Scholar 

  30. Berry GJ, Brunt EM, Chamberlain D, Hruban RH, Sibley RK, Stewart S et al. A working formulation for the standardization of nomenclature in the diagnosis of heart and lung rejection: Lung Rejection Study Group. The International Society for Heart Transplantation. J Heart Transplant 1990; 9: 593–601.

    CAS  PubMed  Google Scholar 

  31. Solé X, Guinó E, Valls J, Iniesta R, Moreno V . SNPStats: a web tool for the analysis of association studies. Bioinformatics 2006; 22: 1928–1929.

    Article  Google Scholar 

Download references

Acknowledgements

We thank Justi Gil and Pepi Caro for their support in the genotyping process and Maria del Pilar Armengol for general support in the laboratory.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to M Juan.

Additional information

Disclosure/conflict of interest

This study was supported by a grant from the Fundación para la Investigación y la Prevención del Sida en España (project number 36487/05), by the Fondo de Investigaciones Sanitarias del Instituto de Salud Carlos III (PI02/0278, PI07/0329), by the Red de Investigación en Enfermedades Renales (REDINREN) and by the PROFIT (FIT 010000-2006-38) of the Banc de Sang i Teixits R Faner and E Pedrosa are recipients of fellowships from Generalitat de Catalunya (2006 BP-B2 00022 and FIE 2006-00015 respectively).

The authors declare no conflict of interest or financial interests.

Supplementary Information accompanies the paper on Genes and Immunity website (http://www.nature.com/gene)

Supplementary information

Rights and permissions

Reprints and permissions

About this article

Cite this article

Colobran, R., Casamitjana, N., Roman, A. et al. Copy number variation in the CCL4L gene is associated with susceptibility to acute rejection in lung transplantation. Genes Immun 10, 254–259 (2009). https://doi.org/10.1038/gene.2008.96

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue date:

  • DOI: https://doi.org/10.1038/gene.2008.96

Keywords

This article is cited by

Search

Quick links