Abstract
Quantifying the contribution of marine microorganisms to carbon and nitrogen cycles and their response to predicted ocean warming is one of the main challenges of microbial oceanography. Here we present a single-cell NanoSIMS isotope analysis to quantify C and N uptake by free-living and attached phytoplankton and heterotrophic bacteria, and their response to short-term experimental warming of 4 °C. Elevated temperature increased total C fixation by over 50%, a small but significant fraction of which was transferred to heterotrophs within 12 h. Cell-to-cell attachment doubled the secondary C uptake by heterotrophic bacteria and increased secondary N incorporation by autotrophs by 68%. Warming also increased the abundance of phytoplankton with attached heterotrophs by 80%, and promoted C transfer from phytoplankton to bacteria by 17% and N transfer from bacteria to phytoplankton by 50%. Our results indicate that phytoplankton-bacteria attachment provides an ecological advantage for nutrient incorporation, suggesting a mutualistic relationship that appears to be enhanced by temperature increases.
Similar content being viewed by others

Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
References
Adam B, Klawonn I, Sveden JB, Bergkvist J, Nahar N, Walve J et al. (2016). N2-fixation, ammonium release and N-transfer to the microbial and classical food web within a plankton community. ISME J 10: 450–459.
Agawin NSR, Duarte CM, Agustí S . (2000). Nutrient and temperature control of the contribution of picoplankton to phytoplankton biomass and production. Limnol Oceanogr 45: 1891–1891.
Alonso-Sáez L, Gasol JM, Arístegui J, Vilas JC, Vaqué D, Duarte CM et al. (2007). Large-scale variability in surface bacterial carbon demand and growth efficiency in the subtropical northeast Atlantic Ocean. Limnol Oceanogr 52: 533–546.
Amin SA, Parker MS, Armbrust EV . (2012). Interactions between diatoms and bacteria. Microbiol Molecular Biol Rev 76: 667–684.
Amin SA, Hmelo LR, van Tol HM, Durham BP, Carlson LT, Heal KR et al. (2015). Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria. Nature 522: 98–101.
Azam F . (1998). Oceanography: microbial control of oceanic carbon flux: the plot thickens. Science 280: 694–696.
Azam F, Long RA . (2001). Sea snow microcosms. Nature 414: 497–498.
Azam F, Malfatti F . (2007). Microbial structuring of marine ecosystems. Nat Rev Microbiol 5: 782–791.
Becquevort S, Rousseau V, Lancelot C . (1998). Major and comparable roles for free-living and attached bacteria in the degradation of Phaeocystis-derived organic matter in Belgian coastal waters of the North Sea. Aquat Microb Ecol 14: 39–48.
Bell W, Mitchell R . (1972). Chemotactic and growth responses of marine bacteria to algal extracellular products. Biol Bull 143: 265.
Bouarab L, Dauta A, Loudiki M . (2004). Heterotrophic and mixotrophic growth of Micractinium pusillum Fresenius in the presence of acetate and glucose: effect of light and acetate gradient concentration. Water Res 38: 2706–2712.
Bratbak G, Dundas I . (1984). Bacterial dry matter content and biomass estimations. Appl Environ Microbiol 48: 755–757.
Buchan A, LeCleir GR, Gulvik CA, Gonzalez JM . (2014). Master recyclers: features and functions of bacteria associated with phytoplankton blooms. Nat Rev Microbiol 12: 686–698.
Cabello AM, Cornejo-Castillo FM, Raho N, Blasco D, Vidal M, Audic S et al. (2016). Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis. ISME J 10: 693–706.
Calvo-Díaz A, Morán XAG . (2006). Seasonal dynamics of picoplankton in shelf waters of the southern Bay of Biscay. Aquat Microb Ecol 42: 159–174.
Calvo-Diaz A, Franco-Vidal L, Morán XAG . (2014). Annual cycles of bacterioplankton biomass and production suggest a general switch between temperature and resource control in temperate coastal ecosystems. J Plankton Res 36: 859–865.
Chen B, Liu H, Huang B, Wang J . (2014). Temperature effects on the growth rate of marine picoplankton. Mar Ecol Prog Ser 505: 37–47.
Cornejo-Castillo FM, Cabello AM, Salazar G, Sanchez-Baracaldo P, Lima-Mendez G, Hingamp P et al. (2016). Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton. Nat Commun 7: 11071.
Croft MT, Lawrence AD, Raux-Deery E, Warren MJ, Smith AG . (2005). Algae acquire vitamin B12 through a symbiotic relationship with bacteria. Nature 438: 90–93.
Del Giorgio PA, Condon R, Bouvier T, Longnecker K, Bouvier C, Sherr E et al. (2011). Coherent patterns in bacterial growth, growth efficiency, and leucine metabolism along a northeastern Pacific inshore-offshore transect. Limnol Oceanogr 56: 1–16.
Duarte CM, Regaudie-de-Gioux A, Arrieta JM, Delgado-Huertas A, Agusti S . (2013). The oligotrophic ocean is heterotrophic. Annu Rev Mar Sci 5: 551–569.
Eiler A, Olsson JA, Bertilsson S . (2006). Diurnal variations in the auto- and heterotrophic activity of cyanobacterial phycospheres (Gloeotrichia echinulata and the identity of attached bacteria. Freshwater Biol 51: 298–311.
Engel A, Handel N, Wohlers J, Lunau M, Grossart HP, Sommer U et al. (2010). Effects of sea surface warming on the production and composition of dissolved organic matter during phytoplankton blooms: results from a mesocosm study. J Plankton Res 33: 357–372.
Gardes A, Iversen MH, Grossart HP, Passow U, Ullrich MS . (2011). Diatom-associated bacteria are required for aggregation of Thalassiosira weissflogii. ISME J 5: 436–445.
Gasol JM, Del Giorgio PA . (2008). Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci Mar 64: 197–224.
Grossart HP, Simon M . (2007a). Interactions of planktonic algae and bacteria: effects on algal growth and organic matter dynamics. Aquat Microb Ecol 47: 163–176.
Grossart HP, Tang KW, Kiorboe T, Ploug H . (2007b). Comparison of cell-specific activity between free-living and attached bacteria using isolates and natural assemblages. FEMS Microbiol Lett 266: 194–200.
Harrison WG, Harris LR, Irwin BD . (1996). The kinetics of nitrogen utilization in the oceanic mixed layer: Nitrate and ammonium interactions at nanomolar concentrations. Limnol Oceanogr 41: 16–32.
Hill PG, Warwick PE, Zubkov MV . (2013). Low microbial respiration of leucine at ambient oceanic concentration in the mixed layer of the central Atlantic Ocean. Limnol Oceanogr 58: 1597–1604.
Jackson GA . (1987). Simulating chemosensory responses of marine microorganisms. Limnol Oceanogr 32: 1253–1266.
Jardillier L, Zubkov MV, Pearman J, Scanlan DJ . (2010). Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean. ISME J 4: 1180–1192.
Kamjunke N, Tittel J . (2008). Utilisation of leucine by several phytoplankton species. Limnologica 38: 360–366.
Kirchman DL, K'nees E, Hodson R . (1985). Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Appl Environ Microbiol 49: 599–607.
Lazier JRN, Mann KH . (1989). Turbulence and the diffusive layers around small organisms. Deep-Sea Res 36: 1721–1733.
Le Bouteiller A . (1986). Environmental control of nitrate and ammonium uptake by phytoplankton in the Equatorial Atlantic Ocean. Mar Ecol Prog Ser 30: 167–179.
L’Helguen S, Maguer JF, Caradec J . (2008). Inhibition kinetics of nitrate uptake by ammonium in size-fractionated oceanic phytoplankton communities: implications for new production and f-ratio estimates. J Plankton Res 30: 1179–1188.
López-Urrutia Á, Morán XAG . (2007). Resource limitation of bacterial production distorts the temperature dependence of oceanic carbon cycling. Ecology 88: 817–822.
Magazzù G, Decembrini F . (1995). Primary production, biomass and abundance of phototrophic picoplankton in the Mediterranean Sea: a review. Aquat Microb Ecol 9: 97–104.
Marañón E, Holligan PM, Barciela R, González N, Mouriño B, Pazó MJ et al. (2001). Patterns of phytoplankton size structure and productivity in contrasting open- ocean environments. Mar Ecol Prog Ser 216: 43–56.
Meehl GA et al. (2007) The physical science basisClimate Change 2007 IPCC Report. Cambridge University Press: Cambridge, UK, pp 748–845.
Mével G, Vernet M, Goutx M, Ghiglione JF . (2008). Seasonal to hour variation scales in abundance and production of total and particle-attached bacteria in the open NW Mediterranean Sea (0–1000 m). Biogeosciences 5: 1573–1586.
Michelou VK, Cottrell MT, Kirchman DL . (2007). Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic Ocean. Appl Environ Microbiol 73: 5539–5546.
Morán XAG, Sebastián M, Pedrós-Alió C, Estrada M . (2006). Response of Southern Ocean phytoplankton and bacterioplankton production to short-term experimental warming. Limnol Oceanogr 51: 1791–1800.
Morán XAG, Scharek R . (2015). Photosynthetic parameters and primary production, with focus on large phytoplankton, in a temperate mid-shelf ecosystem. Estuar Coast Shelf Sci 154: 255–263.
Morán XAG, Alonso-Sáez L, Nogueira E, Ducklow HW, Gonzalez N, Lopez-Urrutia A et al. (2015). More, smaller bacteria in response to ocean's warming? Proc R Soc B 282: 20150371.
Popa R, Weber PK, Pett-Ridge J, Finzi JA, Fallon SJ, Hutcheon ID et al. (2007). Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides. ISME J 1: 354–360.
Rees A, Woodward M, Joint I . (1999). Measurement of nitrate and ammonium uptake at ambient concentrations in oligotrophic waters of the North-East Atlantic Ocean. Mar Ecol Prog Ser 187: 295–300.
Riemann L, Steward GF, Azam F . (2000). Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl Environ Microbiol 66: 578–587.
Rooney-Varga JN, Giewat MW, Savin MC, Sood S, LeGresley M, Martin JL . (2005). Links between phytoplankton and bacterial community dynamics in a coastal marine environment. Microb Ecol 49: 163–175.
Ruiz-González C, Gali M, Sintes E, Herndl GJ, Gasol JM, Simó R . (2012). Sunlight effects on the Osmotrophic uptake of DMSP-sulfur and leucine by polar phytoplankton. PLoS ONE 7: e45545.
Salomon PS, Janson S, Granéli E . (2003). Molecular identification of bacteria associated with filaments of Nodulariaspumigena and their effect on the cyanobacterial growth. Harmful Algae 2: 261–272.
Samo TJ, Smriga S, Malfatti F, Sherwood BP, Azam F . (2014). Broad distribution and high proportion of protein synthesis active marine bacteria revealed by click chemistry at the single cell level. Front Mar Sci 1: 48.
Sarmento H, Montoya JM, Vázquez-Domínguez E, Vaque D, Gasol JM . (2010). Warming effects on marine microbial food web processes: how far can we go when it comes to predictions? Philos T R Soc B 365: 2137–2149.
Sarmiento JL, Slater R, Barber R, Bopp L, Doney SC, Hirst AC et al. (2004). Response of ocean ecosystems to climate warming. Global Biogeochem Cy 18: GB3003.
Simon M, Grossart HP, Schweitzer B, Ploug H . (2002). Microbial ecology of organic aggregates in aquatic ecosystems. Aquat Microb Ecol 28: 175–211.
Smith DC, Azam F . (1992). A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3H-leucine. Mar Microb Food Webs 6: 107–111.
Stockner JG . (1988). Phototrophic picoplankton: an overview from marine and freshwater ecosystems. Limnol Oceanogr 33: 765–775.
Thompson AW, Foster RA, Krupke A, Carter BJ, Musat N, Vaulot D et al. (2012). Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337: 1546–1550.
Vázquez-Domínguez E, Vaqué D, Gasol JM . (2007). Ocean warming enhances respiration and carbon demand of coastal microbial plankton. Global Change Biol 13: 1327–1334.
von Scheibner M, Dorge P, Biermann A, Sommer U, Hoppe HG, Jurgens K . (2014). Impact of warming on phyto-bacterioplankton coupling and bacterial community composition in experimental mesocosms. Environ Microbiol 16: 718–733.
Wagner M . (2009). Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging. Annu Rev Microbiol 63: 411–429.
Znachor P, Nedoma J . (2009). Importance of dissolved organic carbon for phytoplankton nutrition in a eutrophic reservoir. J Plankton Res 32: 367–376.
Zubkov MV, Fuchs BM, Tarran GA, Burkill PH, Amann R . (2003). High rate of uptake of organic nitrogen compounds by prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters. Appl Environ Microbiol 69: 1299–1304.
Acknowledgements
This work was partially supported by COMITE project by Spanish National Investigation+Development+Innovation (I+D+I). Financial support for NAG’s PhD fellowship was provided by the Basque Government. LAS was supported by a ‘Juan de la Cierva’ fellowship from the Spanish Ministry of Science and Education and a Marie Curie Reintegration Grant (FP7, Grant Agreement 268331). XM was partially supported by the Gordon and Betty Moore Foundation Marine Microbiology Initiative grant #3302, and method development at LLNL was funded by the Department of Energy’s Genome Sciences Program grant SCW1039. Work at LLNL was performed under the auspices of the US Department of Energy at Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.
Author contributions
NAG, XM, LAS and XACM designed the study, NAG carried out the incubation experiment and NanoSIMS sample preparation, XM, PKW and NAG performed NanoSIMS analyses, and NAG, PKW and XM analyzed the data. All authors discussed the results and contributed in the manuscript writing.
Author information
Authors and Affiliations
Corresponding authors
Ethics declarations
Competing interests
The authors declare no conflict of interest.
Additional information
Supplementary Information accompanies this paper on The ISME Journal website
Rights and permissions
About this article
Cite this article
Arandia-Gorostidi, N., Weber, P., Alonso-Sáez, L. et al. Elevated temperature increases carbon and nitrogen fluxes between phytoplankton and heterotrophic bacteria through physical attachment. ISME J 11, 641–650 (2017). https://doi.org/10.1038/ismej.2016.156
Received:
Revised:
Accepted:
Published:
Issue date:
DOI: https://doi.org/10.1038/ismej.2016.156
This article is cited by
-
Models and co-culture experiments assess four mechanisms of phytoplankton–bacteria interactions
Nature Microbiology (2025)
-
Single-cell view of deep-sea microbial activity and intracommunity heterogeneity
The ISME Journal (2023)
-
Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum
Nature Communications (2023)
-
Single cell dynamics and nitrogen transformations in the chain forming diatom Chaetoceros affinis
The ISME Journal (2023)
-
Carbon, Nitrogen, and Sulfur Contents in Marine Phytoplankton Cells and Biomass Conversion
Journal of Ocean University of China (2023)

