Table 1 Genome-wide association results for panicle traits divided by subpopulation and covariate combinations.

From: Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters

Subpopulation

Mixed model

Mixed model+HD Cov.

All

709 (358)

496 (256)

aus

148 (52)

117 (44)

indica

48 (38)

54 (39)

tropical japonica

132 (41)

49 (24)

Total associations

1,037 (489)

716 (363)

  1. HD, heading date; LD, linkage disequilbrium; SNP, single-nucleotide polymorphism.
  2. The number of significant peaks is in parentheses and is defined by binning significant SNPs using a sliding window of LD.
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