Table 1 Summary of polymorphisms detected by the HDRA in the different rice subpopulations.
From: Open access resources for genome-wide association mapping in rice
O. sativa | IND | AUS | TRJ | TEJ | ARO | |
|---|---|---|---|---|---|---|
Total accessions | 1,571 | 498 | 187 | 360 | 240 | 38 |
Phenotyped accessions* | 1,146 | 335 | 160 | 256 | 190 | 31 |
Polymorphic SNPs | 671,906 | 619,988 | 547,928 | 551,746 | 470,318 | 392,943 |
Non-synonymous polymorphic SNPs | 109,814 | 100,762 | 88,093 | 89,863 | 78,259 | 62,560 |
SNPs MAF>0.05 | 439,280 | 336,740 | 328,393 | 208,055 | 170,904 | 290,068 |
SNPs MAF>0.10 | 300,769 | 223,094 | 238,308 | 120,538 | 94,826 | 195,271 |
Private SNPs† | — | 25,718 | 10,961 | 9,322 | 4,916 | 3,383 |
