Table 2 Output from the nonlinear mixed-effects modelling of N2O production as an exponential function of experimentally induced decreasing oxygen.

From: Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific

Model

Parameter

Estimate

s.e.

t -value

P value

Random effect

Variance structure

AIC

M1

a

123.94

24.61

5.11

<0.001

Yes

No

746

 

b

0.0535

0.010

5.12

<0.001

No

  

M2

a

120.57

24.17

4.99

<0.001

Yes

Yes

730

 

b

0.0514

0.011

4.37

<0.001

No

  

M3

a

133.44

22.95

5.81

<0.001

Yes

Yes

728*

 

b

0.0732

0.015

4.72

<0.001

Yes

  

M4

a

137.44

23.09

5.95

<0.001

Yes

No

742

 

b

0.0780

0.015

5.05

<0.001

Yes

  

M5

a

612.62

149.7

4.09

<0.001

Yes

Yes

NA

 

b

0.0681

0.009

6.84

<0.001

No

  
  1. NA, not applicable.
  2. *M3 had the lowest AIC score but its random intercept (a) and exponent (b) were highly correlated (r=−0.99), which suggested that the model was over parameterized and therefore M2 was taken as the most parsimonious fit to the data.
  3. The goodness of fit for each model to the data was judged using the Akaike Information Criterion (AIC), where a lower value indicates a better fit. M2 and M3 were improved further by the addition of a power variance structure at the level of each of the 12 experiments. Note that M5 was fitted to data calculated assuming a bacterial mode of N2O production with random isotope pairing of 14NO and 15NO using equations (6 and 7) (pN2Ototal′) and, as such, comparison with the other models using AIC is not appropriate. In addition, note the far higher intercept in M5, which manifests as over production of N2O in Fig. 5b.