Table 1 PB2 proposed mammalian adaptation markers among human and avian H5N1, H9N2, H7N9 and seasonal H3N2 isolates*.

From: The K526R substitution in viral protein PB2 enhances the effects of E627K on influenza virus replication

PB2 genotype

All H5N1

Indonesia H5N1

H9N2

H7N9

H3N2 †

  

Human‡ ( n =261)

Avian§ ( n =1,290)

Human ( n =70)

Avian ( n =48)

Human|| ( n =8)

Avian¶ ( n =620)

Human# ( n =96)

Avian ( n =47)

1968–71 ( n =90)

1972–2014 ( n =4,872)

Proposed human adaptation marker

526R

47

194 (74%)

20

342 (27%)

47

56 (80%)

13

13 (27%)

1

7 (88%)

9

207 (33%)

4

81 (84%)

0

3 (6%)

0

90 (100%)

8

4,858 (99.7%)

 

590S

8

 

38

 

0

 

0

 

5

 

192

 

1

 

0

 

0

 

0

 
 

591K

3

 

0

 

2

 

0

 

0

 

2

 

5

 

0

 

0

 

0

 
 

627K

114

 

279

 

1

 

0

 

0

 

4

 

61

 

3

 

66

 

17

 
 

701N

14

 

2

 

0

 

0

 

1

 

0

 

8

 

0

 

0

 

2

 
 

526R/627K

8

 

3

 

6

 

0

 

0

 

0

 

2

 

0

 

24

 

4,831

 

Avian genotype**

67 (26%)

948 (73%)

14 (20%)

35 (73%)

1 (12%)

413 (67%)

15 (16%)

44 (94%)

0

14 (0.3%)

  1. *Full-length PB2 sequences of seasonal H3N2, human and avian H5N1, H9N2 and H7N9 influenza A viruses from NCBI Influenza Virus Resource Database, and human HPAI H5N1 from Influenza Sequence Database were analysed. Right column under each Human/Avian represents total number and percentage of isolates containing adaptation marker.
  2. †Five human H3N2 isolates contains 526R/590S and one has 591K/701N.
  3. ‡Two human H5N1 isolates from Indonesia contain 526R/591K; two contain 590S/627K; two are 590S/701N and one contains both 627K and 701N markers.
  4. §Two avian H5N1 isolates have 627K/701N and five contain 590S/627K.
  5. ||One human H9N2 isolate has triple adaptation markers, 526R/590S/701N.
  6. ¶Three avian H9N2 isolates contain dual 590S/591K signatures and one has 590S/627K.
  7. #Three human H7N9 isolates contain 526R/701N genotypes.
  8. **Avian genotype indicates isolates that lack any proposed human adaptation markers in the PB2.