Table 2 Consensus integration sites between the primary and metastatic tumors.

From: Viral integration in BK polyomavirus-associated urothelial carcinoma in renal transplant recipients: multistage carcinogenesis revealed by next-generation virome capture sequencing

No.

Sample

No. of chr/location

Involved host genes

BKPyV genes

Composition

Supporting reads (primary/metastatic)

1

Case 1

chr18/61963627

LINC01924/intron/SINE(AluSq)

NCCR

Human-BKPyV

207/1397

2

Case 1

chr18/61965821

LINC01924/intron/SINE(AluSq)

NCCR

Human-BKPyV

81/250

3

Case 1

chr18/61963677

LINC01924/intron/SINE(AluSq)

Large T

BKPyV-Human

206/774

4

Case 2

chr16/28392772

eIF3c/intron/SINE(AluSx)

VP1

Human-BKPyV

4285/4240

5

Case 3

chr8/11633138

NEIL2/intron/LTR(THE1B-int)

Large T

Human-BKPyV

10 462/67 940

  1. No. number, chr chromosome, BKPyV BK polyomavirus, NCCR noncoding control region, VP1 viral protein 1, SINE short interspersed nuclear elements, LTR long terminal repeat.
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