Table 7 Microbiota differences in infants at family and genus level.

From: The association of maternal and infant early gut microbiota with respiratory infections in infants

Family

Genus

 

p_FDR

Fold Change

 

p_FDR

Fold Change

Taxon (Infection episode in the first 3 months)

No differences

  

Firmicutes_Negativicutes_Selenomonadales_Veillonellaceae_Dialister

1.02e-09

597

   

Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Serratia

0.059

179

   

Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_uncultured

0.007

64.7

   

Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Roseburia

0.0002

58.4

   

Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Proteus

0.001

35.0

   

Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Faecalibacterium

8.08e-05

25.4

   

Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Pseudobutyrivibrio

0.039

8.73

   

Actinobacteria_Actinobacteria_Micrococcales_Micrococcaceae_Rothia

0.062

4.14

   

Verrucomicrobia_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Akkermansia

0.043

0.213

   

Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Salmonella

0.018

0.176

Taxon (Infection episode in the first 6 months)

Firmicutes_Negativicutes_Selenomonadales_Acidaminococcaceae

0.002

3.18

Proteobacteria_Gammaproteobacteria_Enterobacteriales_Enterobacteriaceae_Proteus

4.99e-06

12.8

Firmicutes_Negativicutes_Selenomonadales_Veillonellaceae

0.091

0.90

Firmicutes_Clostridia_Clostridiales_Ruminococcaceae_Faecalibacterium

7.33e-16

11.1

   

Firmicutes_Clostridia_Clostridiales_FamilyXIIncertaeSedis_Peptoniphilus

0.0004

8.61

   

Firmicutes_Negativicutes_Selenomonadales_Veillonellaceae_Anaerospora

0.042

7.51

   

Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Roseburia

0.004

4.39

   

Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Pseudobutyrivibrio

0.0004

3.06

   

Firmicutes_Negativicutes_Selenomonadales_Veillonellaceae_Veillonella

0.079

0.914

   

Firmicutes_Clostridia_Clostridiales_Lachnospiraceae_Anaerostipes

1.58e-06

0.081

  1. FDR-corrected P values for microbiota differences at 3 weeks of age between infants who developed a respiratory tract infection episode in the first 3 and 6 months of life with the exclusion of infants with any infection before the first fecal sample and matched infants remaining healthy.
  2. Standard Benjamini-Hochberg corrections for false discovery rate were applied.
  3. FDR false discovery rate.
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