Table 2 Antibodies successfully used with this method

From: Deep imaging of LepR+ stromal cells in optically cleared murine bone hemisections

Antibody

Recommended working concentration

Company

Cat. no.

Primary antibodies

Chicken anti-green fluorescent protein

40 μg/mL

Aves Labs

GFP-1020

Rabbit anti-laminin Ab-1

1:200

Thermo Fisher Scientific

RB-082-A0

Goat anti‑discosoma tdTomato

12 ng/μL

LifeSpan Biosciences

LS-C340696

Rat anti-endomucin (V.7C7)

1:100

Santa Cruz

sc-65495

Goat anti-endomucin

1 ng/μL

R&D Systems

AF4666

Goat anti-VEGFR3/Flt-4

1:100

R&D Systems

AF743

Goat anti-VE-Cadherin

1:100

R&D Systems

AF1002

Rabbit anti-DsRed

1:250

Takara Bio

632496

Rabbit anti-laminin 1 + 2

2 ng/μL

Abcam

ab7463

Rabbit anti-peripherin

1:250

Abcam

ab4666

Biotin goat anti-CD117/c-Kit

1:250

R&D Systems

BAF1356

Rat anti-CD31/PECAM-1 (MEC 13.3)

1:100

Santa Cruz

sc-18916

Rabbit anti-Leptin Receptor

1:100

Abcam

ab318272

Biotin goat anti-Leptin Receptor

2 ng/μL

R&D Systems

BAF497

Biotin hamster anti-CD3e

1:100

BD Biosciences

51-01082 J

Biotin rat anti-CD11b

1:100

BD Biosciences

51-01712 J

Biotin rat anti-CD45R

1:100

BD Biosciences

51-01122 J

Biotin rat anti-Ly-6G and Ly-6C

1:100

BD Biosciences

51-01212 J

Biotin rat anti-Ter119/Erythroid cells

1:100

BD Biosciences

51-09082 J

FITC mouse anti-Actin, α-smooth muscle

1:250

Sigma-Aldrich

F3777

APC rat anti-Ly-6A/E (Sca-1)

2.5 ng/μL

Biolegend

122518

Rabbit anti-tRFP antibody

12 ng/μL

Evrogen

AB233

Secondary antibodies

Donkey anti-goat IgG (H + L) cross-adsorbed secondary antibody, Alexa Fluor 555

4 ng/μL

Thermo Fisher Scientific

A21432

Alexa Fluor 488 AffiniPure F(ab’)2 fragment, donkey anti-rabbit IgG (H + L)

1.2 ng/μL

Jackson ImmunoResearch

711-546-152

Alexa Fluor 647 AffiniPure F(ab’)2 fragment, donkey anti-rabbit IgG (H + L)

1.2 ng/μL

Jackson ImmunoResearch

711-606-152

Alexa Fluor 488 AffiniPure F(ab’)2 fragment, donkey anti-chicken IgY (IgG) (H + L)

1.2 ng/μL

Jackson ImmunoResearch

703-546-155

Alexa Fluor 647 AffiniPure donkey anti-goat IgG (H + L)

4 ng/μL

Jackson ImmunoResearch

705-605-147

Donkey anti-rabbit IgG (H + L) highly cross-adsorbed secondary antibody, Alexa Fluor 546

1:250

Thermo Fisher Scientific

A10040

APC Streptavidin

1:200

Biolegend

405207

Alexa Fluor 594 AffiniPure Fab fragment donkey anti-rat IgG (H + L)

1:500

Jackson ImmunoResearch

712-587-003