Abstract
Multidrug-resistant Acinetobacter baumannii, a common pathogen responsible for nosocomial infections, is the main cause for outbreaks of infectious diseases, such as pneumonia, meningitis, and bacteremia, especially among critically ill patients. Epidemic A. baumannii is a growing public health concern as it is resistant to all existing antimicrobial agents, thereby necessitating the development of new therapeutic approaches to mount an effective immune response against this bacterial pathogen. In this study, we identified a critical role for type I interferon (IFN) in epigenetic regulation during A. baumannii infection and established a central role for it in multiple cell death pathways. A. baumannii infection induced mixed cell death constituted of apoptosis, pyroptosis, and necroptosis. Mechanically, A. baumannii triggered TRIF-dependent type I IFN production, which in turn induced the expression of genes Zbp1, Mlkl, caspase-11, and Gsdmd via KAT2B-mediated and P300-mediated H3K27ac modification, leading to NLRP3 inflammasome activation, and potentially contributed to GSDMD-mediated pyroptosis and MLKL-dependent necroptosis. Our study offers novel insights into the mechanisms of type I IFN and provides potential therapeutic targets for infectious and inflammatory diseases.
Similar content being viewed by others
Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
References
Manchanda V, Sanchaita S, Singh NP, Multidrug resistant acinetobacter. J Glob Infect Dis. 2010;2:291–304.
Perez F, Hujer AM, Hujer KM, Decker BK, Rather PN, Bonomo RA, Global challenge of multidrug-resistant Acinetobacter baumannii. Antimicrob Agents Chemother. 2007;51:3471–84.
Eliopoulos GM, Maragakis LL, Perl TM, Acinetobacter baumannii: epidemiology, antimicrobial resistance, and treatment options. Clin Infect Dis. 2008;46:1254–63.
Ivashkiv LB, Donlin LT, Regulation of type I interferon responses. Nat Rev Immunol. 2014;14:36–49.
Carrero JA, Confounding roles for type I interferons during bacterial and viral pathogenesis. Int Immunol. 2013;25:663–9.
McNab F, Mayer-Barber K, Sher A, Wack A, O’Garra A, Type I interferons in infectious disease. Nat Rev Immunol. 2015;15:87–103.
Trinchieri G, Type I interferon: friend or foe?. J Exp Med. 2010;207:2053–63.
Gratz N, Hartweger H, Matt U, Kratochvill F, Janos M, Sigel S, et al. Type I interferon production induced by Streptococcus pyogenes-derived nucleic acids is required for host protection. PLoS Pathog. 2011;7:e1001345
Watanabe T, Asano N, Fichtner-Feigl S, Gorelick PL, Tsuji Y, Matsumoto Y, et al. NOD1 contributes to mouse host defense against Helicobacter pylori via induction of type I IFN and activation of the ISGF3 signaling pathway. J Clin Invest. 2010;120:1645–62.
de Almeida LA, Carvalho NB, Oliveira FS, Lacerda TLS, Vasconcelos AC, Nogueira L, et al. MyD88 and STING signaling pathways are required for IRF3-mediated IFN-β induction in response to Brucella abortus infection. PLoS One. 2011;6:e23135
Henry T, Kirimanjeswara GS, Ruby T, Jones JW, Peng K, Perret M, et al. Type I IFN signaling constrains IL-17A/F secretion by γδ T cells during bacterial infections. J Immunol. 2010;184:3755–67.
Robinson N, McComb S, Mulligan R, Dudani R, Krishnan L, Sad S, Type I interferon induces necroptosis in macrophages during infection with Salmonella enterica serovar Typhimurium. Nat Immunol. 2012;13:954–62.
Stifter SA, Coleman MC, Feng CG. Regulation of host response to mycobacteria by type I interferons. In: Parker D, editor. Bacterial activation of type I interferons. Cham: Springer International Publishing;, 2014. p. 109–24.
O’Connell RM, Saha SK, Vaidya SA, Bruhn KW, Miranda GA, Zarnegar B, et al. Type I interferon production enhances susceptibility to Listeria monocytogenes infection. J Exp Med. 2004;200:437–45.
Chan FK-M, Luz NF, Moriwaki K. Programmed necrosis in the cross talk of cell death and inflammation. Annu Rev Immunol. 2015;33:79–106.
Bergsbaken T, Fink SL, Cookson BT, Pyroptosis: host cell death and inflammation. Nat Rev Microbiol. 2009;7:99–109.
Man SM, Karki R, Malireddi RKS, Neale G, Vogel P, Yamamoto M, et al. The transcription factor IRF1 and guanylate-binding proteins target activation of the AIM2 inflammasome by Francisella infection. Nat Immunol. 2015;16:467–75.
Rathinam Vijay AK, Vanaja Sivapriya K, Waggoner L, Sokolovska A, Becker C, Stuart Lynda M, et al. TRIF licenses caspase-11-dependent NLRP3 inflammasome activation by Gram-negative bacteria. Cell. 2012;150:606–19.
Carrero JA, Calderon B, Unanue ER, Type I interferon sensitizes lymphocytes to apoptosis and reduces resistance to Listeria infection. J Exp Med. 2004;200:535–40.
Qi X, Man SM, Malireddi RKS, Karki R, Lupfer C, Gurung P, et al. Cathepsin B modulates lysosomal biogenesis and host defense against Francisella novicida infection. J Exp Med. 2016;213:2081–97.
Murphy James M, Czabotar Peter E, Hildebrand Joanne M, Lucet Isabelle S, Zhang J-G, Alvarez-Diaz S, et al. The pseudokinase MLKL mediates necroptosis via a molecular switch mechanism. Immunity. 2013;39:443–53.
Chawla-Sarkar M, Lindner DJ, Liu YF, Williams BR, Sen GC, Silverman RH, et al. Apoptosis and interferons: role of interferon-stimulated genes as mediators of apoptosis. Apoptosis. 2003;8:237–49.
Henry T, Brotcke A, Weiss DS, Thompson LJ, Monack DM, Type I interferon signaling is required for activation of the inflammasome during Francisella infection. J Exp Med. 2007;204:987–94.
Gurung P, Malireddi RKS, Anand PK, Demon D, Walle LV, Liu Z, et al. Toll or interleukin-1 receptor (TIR) domain-containing adaptor inducing interferon-β (TRIF)-mediated caspase-11 protease production integrates toll-like receptor 4 (TLR4) protein- and Nlrp3 inflammasome-mediated host defense against enteropathogens. J Biol Chem. 2012;287:34474–83.
Storek KM, Gertsvolf NA, Ohlson MB, Monack DM, cGAS and Ifi204 cooperate to produce type I IFNs in response to Francisella infection. J Immunol. 2015;194:3236–45.
Kang M-J, Jo S-G, Kim D-J, Park J-H. NLRP3 inflammasome mediates interleukin-1β production in immune cells in response to Acinetobacter baumannii and contributes to pulmonary inflammation in mice. Immunology. 2017;150:495-505.
Takaoka A, Wang Z, Choi MK, Yanai H, Negishi H, Ban T, et al. DAI (DLM-1/ZBP1) is a cytosolic DNA sensor and an activator of innate immune response. Nature. 2007;448:501–5.
Upton Jason W, Kaiser William J, Mocarski Edward S, DAI/ZBP1/DLM-1 complexes with RIP3 to mediate virus-induced programmed necrosis that is targeted by murine cytomegalovirus vIRA. Cell Host Microbe. 2012;11:290–7.
Kuriakose T, Man SM, Malireddi RKS, Karki R, Kesavardhana S, Place DE, et al. ZBP1/DAI is an innate sensor of influenza virus triggering the NLRP3 inflammasome and programmed cell death pathways. Sci Immunol. 2016;1:aag2045
Lin J, Kumari S, Kim C, Van T-M, Wachsmuth L, Polykratis A, et al. RIPK1 counteracts ZBP1-mediated necroptosis to inhibit inflammation. Nature. 2016;540:124–8.
Newton K, Wickliffe KE, Maltzman A, Dugger DL, Strasser A, Pham VC, et al. RIPK1 inhibits ZBP1-driven necroptosis during development. Nature. 2016;540:129–33.
Shi J, Zhao Y, Wang K, Shi X, Wang Y, Huang H, et al. Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death. Nature. 2015;526:660–5.
Ding J, Wang K, Liu W, She Y, Sun Q, Shi J, et al. Pore-forming activity and structural autoinhibition of the gasdermin family. Nature. 2016;535:111–6.
Qi X, Formation of membrane pores by gasdermin-N causes pyroptosis. Sci China Life Sci. 2016;59:1071–3.
Shi J, Gao W, Shao F. Pyroptosis: gasdermin-mediated programmed necrotic cell death. Trends Biochem Sci 2017; 42:245–254.
Schneider WM, Chevillotte MD, Rice CM. Interferon-stimulated genes: a complex web of host defenses. Annu Rev Immunol. 2014;32:513–45.
Bierne H, Hamon M, Cossart P, Epigenetics and bacterial infections. Cold Spring Harb Perspect Med. 2012;2:a010272
Saeed S, Quintin J, Kerstens HHD, Rao NA, Aghajanirefah A, Matarese F, et al. Epigenetic programming during monocyte to macrophage differentiation and trained innate immunity. Science. 2014;345:1251086.
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature. 2014;515:355–64.
Pasini D, Malatesta M, Jung HR, Walfridsson J, Willer A, Olsson L, et al. Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes. Nucleic Acids Res. 2010;38:4958–69.
Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, et al. New nomenclature for chromatin-modifying enzymes. Cell. 2007;131:633–6.
Margueron R, Reinberg D, The polycomb complex PRC2 and its mark in life. Nature. 2011;469:343–9.
Tie F, Banerjee R, Conrad PA, Scacheri PC, Harte PJ, Histone demethylase UTX and chromatin remodeler BRM bind directly to CBP and modulate acetylation of histone H3 lysine 27. Mol Cell Biol. 2012;32:2323–34.
Kayagaki N, Stowe IB, Lee BL, O/‘Rourke K, Anderson K, Warming S, et al. Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling. Nature. 2015;526:666–71.
Shi J, Zhao Y, Wang Y, Gao W, Ding J, Li P, et al. Inflammatory caspases are innate immune receptors for intracellular LPS. Nature. 2014;514:187–92.
Kayagaki N, Wong MT, Stowe IB, Ramani SR, Gonzalez LC, Akashi-Takamura S, et al. Noncanonical inflammasome activation by intracellular LPS independent of TLR4. Science. 2013;341:1246–9.
McComb S, Cessford E, Alturki NA, Joseph J, Shutinoski B, Startek JB, et al. Type-I interferon signaling through ISGF3 complex is required for sustained Rip3 activation and necroptosis in macrophages. Proc Natl Acad Sci. 2014;111:E3206–E3213.
Ge J, Gong Y-N, Xu Y, Shao F, Preventing bacterial DNA release and absent in melanoma 2 inflammasome activation by a Legionella effector functioning in membrane trafficking. Proc Natl Acad Sci USA. 2012;109:6193–8.
Guo C, Xie S, Chi Z, Zhang J, Liu Y, Zhang L, et al. Bile acids control inflammation and metabolic disorder through inhibition of NLRP3 inflammasome. Immunity. 2016;45:802–16.
Javed N, Xue G, Lu A, Xing Y, Iwakura Y, Xiao H, et al. Cross reactivity of S. aureus to murine cytokine assays: a source of discrepancy. Cytokine. 2016;81:101–8.
Qi X, Hong J, Chaves L, Zhuang Y, Chen Y, Wang D, et al. Antagonistic regulation by the transcription factors C/EBPa and MITF specifies basophil and mast cell fates. Immunity. 2013;39:97–110.
Acknowledgements
We thank Dr. Feng Shao for the Ifnar−/−, Irf3−/−/Irf7−/−, and Aim2−/− mice, Dr. Shengzhong Duan (Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences) for L929 cells, groups of Drs. Jumin Zhou, Yongtang Zheng, Jiali Li (Kunming Institute of Zoology) for technical assistance. This work was supported by the National Key Research and Development Program of China (2017YFD0500300), the Chinese Academy of Sciences (CXJJ-17-M141, Y4ZK111B01, QYZDJ-SSW-SMC012, and Y602381081), the National Natural Science Foundation of China (31701134 and 81701578), Chinese Academy Chinese National Natural Science Foundation (21761142002) and Key Laboratory of Bioactive Peptides of Yunnan Province (AMHD-2018-2).
Author contributions
X. Qi designed the study; Y. Li, X. Guo, C. Hu, Y. Du, C. Guo, D. Wang, W. Zhao, G. Huang, C. Li, Q. Lu, R. Lai, T. Xu, and X. Qi performed experiments and analyzed the data; and X. Qi wrote the manuscript.
Author information
Authors and Affiliations
Corresponding authors
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Edited by A. Oberst
Yang Li and Xiaomin Guo are Co-first author.
Electronic supplementary material
Rights and permissions
About this article
Cite this article
Li, Y., Guo, X., Hu, C. et al. Type I IFN operates pyroptosis and necroptosis during multidrug-resistant A. baumannii infection. Cell Death Differ 25, 1304–1318 (2018). https://doi.org/10.1038/s41418-017-0041-z
Received:
Revised:
Accepted:
Published:
Version of record:
Issue date:
DOI: https://doi.org/10.1038/s41418-017-0041-z
This article is cited by
-
An aptamer-based “Gate-lock-key” strategy for metal-organic framework nanozyme-catalyzed colorimetric detection of multidrug-resistant bacteria
Microchimica Acta (2026)
-
A computational analysis of programmed cell death-associated LncRNA signatures in glioma and drug prediction
BMC Neurology (2025)
-
Goblet cell breakdown: transcriptomics reveals Acinetobacter baumannii early and robust inflammatory response in differentiated human bronchial epithelial cells
Journal of Biomedical Science (2025)
-
Bergeyella cardium variant induces a unique cytoplasmic vacuolization cell death floatptosis in macrophage
Cell Discovery (2025)
-
Identification of hub biomarkers and immune cell infiltrations participating in the pathogenesis of endometriosis
Scientific Reports (2025)


