Table 1 Resource table.
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
Antibodies | ||
Anti-mouse CD16/32 Antibody | Biolegend | Cat# 101302 RRID: AB_312801 |
APC anti-mouse/human CD11b Antibody | Biolegend | Cat# 101212 RRID: AB_312795 |
Brilliant Violet 421™ anti-mouse TNF-α Antibody | Biolegend | Cat# 506327 RRID: AB_10900823 |
F4/80 Monoclonal Antibody (BM8), FITC | Invitrogen | Cat# 11-4801-82 RRID: AB_2637191 |
FITC anti-mouse CD14 Antibody | Biolegend | Cat# 123307 RRID: AB_940578 |
HRP Goat Anti-Mouse IgG H+L | Biotium | Cat# 20400-1mg RRID: AB_3083795 |
HRP Goat Anti-Rabbit IgG (H+L) | Biotium | Cat# 20402-1mg RRID: AB_3083796 |
HRP Goat Anti-Rat IgG | Sigma Aldrich | Cat# A9037-1ML RRID: AB_258429 |
Mouse monoclonal anti-β-ACTIN | Sigma Aldrich | Cat# A1978 RRID: AB_476692 |
Mouse monoclonal anti-CHOP | Cell Signaling Technology | Cat# 2895 RRID: AB_2089254 |
Mouse monoclonal anti-phospho-IκBα (Ser32/36) | Cell Signaling Technology | Cat# 9246 RRID: AB_2267145 |
Mouse monoclonal anti-NF-κB p65 | Santa Cruz | Cat# sc-8008 RRID: AB_628017 |
Mouse monoclonal anti-ZBP1 | Adipogen | Cat# AG-20B-0010 RRID: 2490191 |
Rabbit monoclonal anti-BIP | Cell Signaling Technology | Cat# 3177 RRID: AB_2119845 |
Rabbit polyclonal anti-GPX4 | Abcam | Cat# ab41787 RRID: AB_941790 |
Rabbit polyclonal anti-IκBα | Santa Cruz | Cat# sc-371 RRID: AB_2235952 |
Rabbit monoclonal anti-MIF | Cell Signaling Technology | Cat# 87501S RRID: AB_2943242 |
Rabbit monoclonal anti-phospho-NF-κB p65 (Ser536) | Cell Signaling Technology | Cat# 3033 RRID: AB_331284 |
Rabbit monoclonal anti-phospho-MLKL (Ser345) | Cell Signaling Technology | Cat# 37333 RRID: AB_2799112 |
Rat monoclonal anti-MLKL | Millipore | Cat# MABC604 RRID: AB_2820284 |
Chemicals, peptides, and recombinant proteins | ||
2-Propanol | Roth | Cat# 9866.5 |
3,3′5,5′ tetramethylbenzidine (TMB) | Sigma Aldrich | Cat# 87748 |
30% H2O2 | Sigma Aldrich | Cat# 95313 |
ABT737 | Cayman Chemical | Cat# 11501-1 |
Acetic Acid (CH3COOH) | Roth | Cat# 3738.2 |
Acetone | Sigma Aldrich | Cat# 179124 |
Acetonitrile hypergrade for LC-MS | Merck Millipore | Cat# 1.00029.2500 |
Amersham ECL Prime Western Blotting Detection Reagent | Cytiva | Cat# RPN2235 |
Ammonium carbonate | Merck Millipore | Cat# 207861-500G |
Ammonium hydroxide solution | Merck Millipore | Cat# 221228-1L-A |
Ammonium persulfate | Sigma Aldrich | Cat# 431532 |
Arg10 HCL | Silantes | Cat# 201604102 |
Benzonase HC | Merck Millipore | Cat# 71206 |
Birinapant | Selleck Chem | Cat# S7015 |
Bovine Serum Albumin (BSA) | Sigma Aldrich | Cat# A7030 |
BODIPY™ 581/591 C11 | Invitrogen | Cat# D3861 |
Brefeldin A | Biolegend | Cat# 420601 |
CAA (2-Chloracetamid) | Merck Millipore | Cat# 79-07-2 |
cOmplete™, EDTA-free Protease Inhibitor Cocktail | Sigma Aldrich | Cat# 4693132001 |
DMEM, high glucose, no glutamine, no phenol red | Thermo Fisher | Cat# 31053028 |
DMEM, high glucose, GlutaMAX™ supplement | Thermo Fisher | Cat# 61965059 |
Dimethyl sulfoxide (DMSO) | PAN Biotech | Cat# P60-36720100 |
Dithiothreitol (DTT) | VWR | Cat# 441496P |
Doxycycline | VWR | Cat# J63805.06 |
DRAQ7 | Biolegend | Cat# 424001 |
eBioscience™ Fixable Viability Dye eFluor™ 780 | Invitrogen | Cat# 65-0865-14 |
EDTA (Versene), 1%, in PBS, without Ca2+ and Mg2+ | Genexxon Bioscience | Cat# C4263.0100 |
Emricasan | Hölzel | Cat# HY-10396 |
Erastin | Biomol | Cat# 5449/10 |
Ethanol 99%, absolute | Roth | Cat# 9065.3 |
Ethylenediaminetetraacetic acid (EDTA) | VWR | Cat# 1084520250 |
Ferrostatin-1 | Cayman Chemicals | Cat# 17729 |
Formic acid | Honeywell/Fluka | Cat# 607-001-00-0 |
ITS+1 | Sigma Aldrich | Cat# I2521 |
LPS from E. coli, Serotype EH100 (Ra) (TLRGRADE™) (Ready-to-Use) | Enzo | Cat# ALX-581-010-L001 |
Lys8 HCL | Silantes | Cat# 211604102 |
Lysyl Endopeptidase (LysC) | WAKO | Cat# 129-02541 |
Methanol-LC-MS grade | VWR | Cat# 1.06035.2500 |
Murine His-TNF-alpha | Walczak lab | Kupka et al. [115] |
ML210 | Tocris | Cat# 6429/10 |
N, N, N′, N′-Tetramethylethylenediamine (TEMED) | Sigma | Cat# T9281 |
Necrostatin-1s | Abcam | Cat# ab221984 |
PBS, pH 7.4 | Thermo Fisher | Cat# 10010056 |
Penicillium Streptomycin (P/S) | Sigma | Cat# P4333-100ML |
PhosSTOP™ | Sigma | Cat# 4906837001 |
Ponceau S | Sigma | Cat# P3504 |
Protease inhibitor | Sigma Aldrich | Cat# 4693132001 |
Recombinant Murine M-CSF | Peprotech | Cat# 315-02 |
RIPA buffer | Thermo Fisher | Cat# 89901 |
ROTIPHORESE® Gel 30 | Roth | Cat# 3029.2 |
RPMI 1640 medium | Thermo Fisher | Cat# 21875091 |
RSL3 | Selleck Chem | Cat# S8155 |
S63845 | Selleck Chem | Cat# S8383 |
SILAC DMEM FBS Kit | Silantes | Cat# 282006500 |
Skim milk powder | VWR | Cat# A0830 |
Sodium Acetate Trihydrate (CH3COONa.3H2O) | VWR | Cat# 1062671000 |
Sodium Azide | Sigma | Cat# S2002-100G |
Sodium Chloride (NaCl) | VWR | Cat# 1064045000 |
Sodium dodecyl sulfate (SDS) | Sigma Aldrich | Cat# L3771-100G |
STY-BODIPY | Cayman Chemical | Cat# Cay27089-500 |
Sulfuric acid 10% (H2SO4) | VWR | Cat# 95441000 |
SuperSignalTM West Femto Maximum Sensitivity Substrate | Thermo Fisher | Cat# 34095 |
Tamoxifen (4OHT) | Sigma Aldrich | Cat# H7904-5MG |
TEAB | Sigma Aldrich | Cat# T7408 |
Tris | VWR | Cat# 1083872500 |
Tris-HCl | VWR | Cat# 648313-250 |
Triton x100 | VWR | Cat# 1086031000 |
Trypsin-EDTA (%0.25) | Gibco | Cat# 25200056 |
Tween 20 | VWR | Cat# 0777-1L |
Urea | Sigma Aldrich | Cat# U1250 |
Valine-d8 | CK Isotopes | Cat# DLM-488 |
Critical commercial assays | ||
8-OHdG ELISA | BioVision | Cat# K4160-100 |
Bicinchoninic acid (BCA) protein assay | Biorad | Cat# 774985 |
Click Chemistry Capture Kit | Jena Bioscience | Cat# CLK-1065 |
CytoTox 96® Non-Radioactive Cytotoxicity Assay | Promega | Cat# G1780 |
LunaScript RT SuperMix Kit | NEB | Cat# E3010L |
Luna Universal qPCR Master Mix | NEB | Cat# M3003E |
Mouse CXCL1/KC DuoSet ELISA | R&D Systems | Cat# DY453 |
Mouse CXCL2/MIP-2 DuoSet ELISA | R&D Systems | Cat# DY452 |
Mouse IL-1beta/IL-1F2 DuoSet ELISA | R&D Systems | Cat# DY401 |
Mouse IL-6 DuoSet ELISA | R&D Systems | Cat# DY406 |
Mouse MIF DuoSet ELISA | R&D Systems | Cat# DY1978 |
Mouse TNF-alpha DuoSet ELISA | R&D Systems | Cat# DY410 |
NucleoSpin RNA Kit | Macherey-Nagel | Cat# 740955250 |
Prostaglandin E2 Parameter Assay Kit | R&D Systems | Cat# KGE004B |
Proteome Profiler Mouse XL Cytokine Array | R&D Systems | Cat# ARY028 |
RealTime-Glo™ Extracellular ATP Assay | Promega | Cat# GA5010 |
Deposited data | ||
Proteomics Data | PRIDE database | PXD050979 |
Lipidomics | Metabolights database | MTBLS9798 |
Metabolomics | National Metabolomics Data Repository [116] | ST003635 |
Bulk RNA seq | NCBI Gene Expression Omnibus | GSE262664 |
Experimental models: Cell lines | ||
GPX4 Control mouse small cell lung cancer tumor line RP252.7 | Bebber et al. [35] | N/A |
GPX4 KO mouse small cell lung cancer tumor line RP252.7 | Bebber et al. [35] | N/A |
Tamoxifen-inducible GPX4 KO mouse embryonic fibroblast cell line Pfa1 | Seiler et al. [31] | N/A |
mFSP1 overexpressing, tamoxifen-inducible GPX4 KO mouse embryonic fibroblast cell line Pfa1 | Doll et al. [9] | N/A |
Immortalized murine bone marrow-derived macrophages (iBMDM line CL13) | De Nardo et al. [65] | N/A |
ZBP1i MEFs | Jiao et al. [36] | N/A |
Empty vector-inducible MEFs | Jiao et al. [36] | N/A |
pBMDMs | von Karstedt lab | This paper |
PMLFs | von Karstedt lab | This paper |
Experimental models: Organisms/strains | ||
Mus Musculus: C57BL/6 N in-house strain was used for the generation of primary cells | CECAD in vivo research facility at the Cologne University Medical Center | Jackson Laboratory Cat# 005304 RRID: IMSR_JAX:005304 |
Oligonucleotides | ||
Please refer to Supplementary Table 6 | ||
Software and algorithms | ||
MaxQuant versions 1.5.3.8 and 2.0.3 | Tyanova et al. [100] | https://cox-labs.github.io/coxdocs/maxquant_instructions.html |
Perseus 1.6.15 | Tyanova et al. [101] | https://cox-labs.github.io/coxdocs/perseus_instructions.html |
Uniprot reference genome Last access 26.08.2020 | The UniProt consortium | ID: UP000000589 |
Tracefinder version 5.0 | Thermo Fisher | https://www.thermofisher.com/order/catalog/product/OPTON-31001 |
Compound Discoverer version 3.2 | Thermo Fisher | https://www.thermofisher.com/order/catalog/product/OPTON-31055 |
Flowjo version 10.6.2 | BD Life Sciences | https://www.flowjo.com/solutions/flowjo/downloads/previous-versions |
The FUSION Solo S software | Vilber | |
SeeMS version 3.0.23277.0 | Chambers et al. [117] | |
Prism version 10 | GraphPad | |
ChemDraw version 21.0 | Revvity Signals/Perkin Elmer | RRID:SCR_016768 |
Skyline software 23.1 | Chambers et al. [117] | |
IncuCyte 2021B | Sartorius | https://www.sartorius.com/en/products/live-cell-imaging-analysis/live-cell-analysis-software |
AccuCor algorithm | Xiaoyang Su | |