Table 1 The roles of m6A regulators in RNA metabolism.

From: N6-methyladenosine: a key regulator in ocular disease mechanisms and treatment

Type

Proteins

Family

Location

Functions

Ref

Writers

METTL3

Methyltransferase family

Cytoplasm and nucleus

Regulates RNA stability, translation efficiency, and splicing by catalyzing m6A modification

[265]

METTL14

Methyltransferase family

nucleus

Significantly enhances catalytic activity by stabilizing METTL3 conformation and participating in RNA substrate recognition

[266]

METTL16

Methyltransferase family

Cytoplasm and nucleus

Specifically adds m6A modifications to various RNA molecules

[267]

RBM15

RNA-binding protein family

Nucleus

Binds the m6A complex and recruits it to specialized RNA sites

[268]

WTAP

Wilms tumor-associated protein family

Nucleus

Interacts with METTL3 and METTL14 to regulate m6A modification complex activity

[269]

VIRMA

Methyltransferase complex

Nucleus

Guides writers to specific RNA regions

[270]

ZC3H13

CCCH-type zinc finger protein family

Nucleus

Bridges RBM15 to WTAP, ensuring nuclear localization of the m6A methyltransferase complex

[271]

Erasers

FTO (ALKBH9)

Alpha-ketoglutarate-dependent dioxygenase family

Nucleus

Demethylates m6A by oxidizing it to hm6A and then to f6A

[272]

ALKBH5

Alpha-ketoglutarate-dependent dioxygenase family

Nucleus

Demethylates m6A by directly removing methyl groups from methylated adenosine

[273]

ALKBH3

Alpha-ketoglutarate-dependent dioxygenase family

Cytoplasm and nucleus

Facilitates DNA repair, tRNA demethylation, and enhances protein translation efficiency

[274]

Readers

YTHDF1

YTH domain protein family

Cytoplasm

Interacts with eIF3 to direct mRNA into the translation initiation complex, promoting translation initiation

[275]

YTHDF2

YTH domain protein family

Cytoplasm

The C-terminal YTH domain recognizes m6A sites and the N-terminus binds to CNOT1, recruiting the CCR4-NOT complex to transport m6A-modified RNA to P-bodies for accelerated degradation

[276]

YTHDF3

YTH domain protein family

Cytoplasm

Collaborates with YTHDF1 and YTHDF2 to promote translation efficiency of m6A-modified mRNAs

[277]

YTHDC1

YTH domain protein family

Nucleus

Interacts with SRSF3, NXF1, and TREX complexes to promote nuclear export and splicing regulation of mRNAs

[278]

YTHDC2

YTH domain protein family

Cytoplasm

Interacts with 5′3′ exoribonuclease 1 (XRN1) to promote degradation of m6A-modified mRNAs while enhancing translation efficiency

[279]

IGF2BP1

Insulin-like growth factor 2 mRNA-binding protein family

Cytoplasm

Enhances mRNA stability and translation

[280]

IGF2BP2

Insulin-like growth factor 2 mRNA-binding protein family

Cytoplasm

Enhances mRNA stability and translation

[281]

IGF2BP3

Insulin-like growth factor 2 mRNA-binding protein family

Cytoplasm

Enhances mRNA stability and translation

[282]

HNRNPC

Heterogeneous nuclear ribonucleoprotein family

Nucleus

Regulates mRNA abundance and splicing

[283]

HNRNPG

Heterogeneous nuclear ribonucleoprotein family

Nucleus

Regulates mRNA abundance and splicing

[284]

HNRNPA2B1

Heterogeneous nuclear ribonucleoprotein family

Nucleus

Recognizes m6A core motif RGAC and regulates RNA selective cleavage in a METTL3-dependent manner

[285]

eIF3

Eukaryotic initiation factor family

Cytoplasm

Enhances the assembly of translation initiation complexes, regulating translation efficiency

[286]

  1. CNOT1 CCR4-NOT transcription complex subunit 1, f6A N6-formyladenosine, hm6A N6-hydroxymethyladenosine, NXF1 nuclear RNA export factor 1, P-body processing body, SRSF3 serine/arginine-rich splicing factor 3, TREX the three-prime repair exonuclease, XRN1 5′-3′ Exoribonuclease 1.