Abstract
Interpretation of sequence variants is an ongoing challenge and new approaches aim to increase stringency. The reclassification of variants has the potential to alter medical management and elicit psychosocial consequences for patients. The perspective of patients with an inherited cardiac disease and a clinically significant variant reclassification was explored through semi-structured phone interviews. Participants were recruited from two specialized multidisciplinary centers in Canada and Australia. Qualitative analysis was performed through a thematic analysis approach. Fifteen participants were interviewed, including 9 (60%) with an inherited cardiomyopathy and 6 (40%) with an inherited arrhythmia syndrome. Six (40%) patients had a classification upgrade, while 9 (60%) had a downgrade. Four major themes emerged: (1) reactions towards the reclassified variant; (2) impact on decision-making; (3) perception of the reclassification process; and (4) improvement of the reclassification process. Many patients adjusted to the reclassification, however some misunderstood the implications, impacting their responses and decision-making. In conclusion, careful discussion with patients about uncertainty and the potential for reclassification are crucial to ensure a deeper understanding of the outcome of genetic testing and impact on families.
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References
Ackerman MJ, Priori SG, Willems S, Berul C, Brugada R, Calkins H, et al. HRS/EHRA expert consensus statement on the state of genetic testing for the channelopathies and cardiomyopathies this document was developed as a partnership between the Heart Rhythm Society (HRS) and the European Heart Rhythm Association (EHRA). Heart Rhythm. 2011;8:1308–39.
Burns C, Bagnall RD, Lam L, Semsarian C, Ingles J. Multiple gene variants in hypertrophic cardiomyopathy in the era of next-generation sequencing. Circ Cardiovasc Genet. 2017;10:e001666.
Alfares AA, Kelly MA, McDermott G, Funke BH, Lebo MS, Baxter SB, et al. Results of clinical genetic testing of 2,912 probands with hypertrophic cardiomyopathy: expanded panels offer limited additional sensitivity. Genet Med. 2015;17:880–8.
Ingles J, Semsarian C. Conveying a probabilistic genetic test result to families with an inherited heart disease. Heart Rhythm. 2014;11:1073–8.
Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17:405–24.
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature. 2016;536:285–91.
Schymanski R, Sturm A, Hashimoto S, Morales A, Pyatt R. Impact of variant reclassification in the clinical setting of cardiovascular genetics. J Genet Couns. 2017;26:1411–511. (abstract)
Das KJ, Ingles J, Bagnall RD, Semsarian C. Determining pathogenicity of genetic variants in hypertrophic cardiomyopathy: importance of periodic reassessment. Genet Med. 2014;16:286–93.
Murray ML, Cerrato F, Bennett RL, Jarvik GP. Follow-up of carriers of BRCA1 and BRCA2 variants of unknown significance: variant reclassification and surgical decisions. Genet Med. 2011;13:998–1005.
Burns C, Yeates L, Spinks C, Semsarian C, Ingles J. Attitudes, knowledge and consequences of uncertain genetic findings in hypertrophic cardiomyopathy. Eur J Hum Genet. 2017;25:809–15.
Solomon I, Harrington E, Hooker G, Erby L, Axilbund J, Hampel H, et al. Lynch syndrome limbo: patient understanding of variants of uncertain significance. J Genet Couns. 2017;26:866–77.
Makhnoon S, Garrett LT, Burke W, Bowen DJ, Shirts BH. Experiences of patients seeking to participate in variant of uncertain significance reclassification research. J Community Genet. 2018. https://doi.org/10.1007/s12687-018-0375-3.
Creswell JW. Qualitative inquiry and research design: choosing among five approaches. 3rd edn. Thousand Oaks, CA, USA: Sage Publications; 2003.
Ackerman JP, Bartos DC, Kapplinger JD, Tester DJ, Delisle BP, Ackerman MJ. The promise and peril of precision medicine: phenotyping still matters most. Mayo Clin Proc. 2016;91:1606–16.
Burns C, James C, Ingles J. Communication of genetic information to families with inherited rhythm disorders. Heart Rhythm. 2018;15:780–6.
Predham S, Hathaway J, Hulait G, Arbour L, Lehman A. Patient recall, interpretation, and perspective of an inconclusive long QT syndrome genetic test result. J Genet Couns. 2017;26:150–8.
Khouzam A, Kwan A, Baxter S, Bernstein JA. Factors associated with uptake of genetics services for hypertrophic cardiomyopathy. J Genet Couns. 2015;24:797–809.
Carrieri D, Lucassen AM, Clarke AJ, Dheensa S, Doheny S, Turnpenny PD, et al. Recontact in clinical practice: a survey of clinical genetics services in the United Kingdom. Genet Med. 2016;18:876–81.
Carrieri D, Dheensa S, Doheny S, Clarke AJ, Turnpenny PD, Lucassen AM, et al. Recontacting in clinical practice: an investigation of the views of healthcare professionals and clinical scientists in the United Kingdom. Eur J Hum Genet. 2017;25:275–9.
Hershberger RE, Givertz MM, Ho CY, Judge DP, Kantor PF, McBride KL et al. Genetic evaluation of cardiomyopathy—a Heart Failure Society of America practice guideline. J Card Fail. 2018;24:281–302.
Ingles J, Lind JM, Phongsavan P, Semsarian C. Psychosocial impact of specialized cardiac genetic clinics for hypertrophic cardiomyopathy. Genet Med. 2008;10:117–20.
Reuter C, Grove ME, Orland K, Spoonamore K, Caleshu C. Clinical cardiovascular genetic counselors take a leading role in team-based variant classification. J Genet Couns. 2017;27:751–60.
Carrieri D, Howard HC, Benjamin C, Clark AJ, Dheensa S, Doheny S, et al. Recontacting patients in clinical genetics services: recommendations of the European Society of Human Genetics. Eur J Hum Genet. 2018. https://doi.org/10.1038/s41431-018-0285-1.
Acknowledgements
CB is the recipient of an Australia Postgraduate Award (APA). CS is the recipient of a National Health and Medical Research Council (NHMRC) Practitioner Fellowship (#1059156). ADK receives support from the Heart and Stroke Foundation of Canada (Ottawa, ON), the Sauder Family and Heart and Stroke Foundation Chair in Cardiology (Vancouver, BC), the Paul Brunes Chair in Heart Rhythm Disorders (Vancouver, BC), and the Paul Albrechtson Foundation (Winnipeg, MB). JI is a recipient of a Heart Foundation of Australia Future Leader Fellowship (#100833).
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Wong, E.K., Bartels, K., Hathaway, J. et al. Perceptions of genetic variant reclassification in patients with inherited cardiac disease. Eur J Hum Genet 27, 1134–1142 (2019). https://doi.org/10.1038/s41431-019-0377-6
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DOI: https://doi.org/10.1038/s41431-019-0377-6
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