Table 1 Summary statistics and fitted demographic parameters for three analysed data sets: (i) whole genome resequencing for 5 individuals at 30X coverage, (ii) whole genome resequencing for 35 individuals at 9X coverage, (iii) RADseq for 254 individuals.

From: Contrasting whole-genome and reduced representation sequencing for population demographic and adaptive inference: an alpine mammal case study

 

High coverage WGS (n = 5)

Mid-coverage WGS (n = 35)

RADseq (n = 254)

Summary statistics

 Number of SNPs

5,509,220

9,196,294

65,890

 π

8.68 × 10−4

8.97 × 10−4

4.22 × 10−4

 Ts/Tv

2.06

1.89

2.00

 Tajima’s D

0.500

0.251

0.087

 Hetobs

0.291

0.173

0.141

Demographic parameters

 Contemporary Ne - South

-

28 ± 2

24 ± 1

 Contemporary Ne - North

-

11 ± 0.4

10 ± 0.2

 Tsplit

-

0.029

0.037

 Optimal K

-

3

4

 FST

-

0.248

0.212

Back to article page