Table 3 Imputed SNPs surpassing genome-wide significance within and near MMP20
From: Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk
SNP | POS | A1 | Discovery | Replication | Combined | |||
|---|---|---|---|---|---|---|---|---|
OR | P value | OR | P value | OR | P value | |||
rs11225333 | 102454685 | A | 2.838 | 4.34 × 10−7 | 2.206 | 0.012 | 2.673 | 9.71 × 10−10 |
rs5024119 | 102463359 | G | 2.861 | 4.35 × 10−7 | 2.370 | 0.007 | 2.736 | 4.07 × 10−10 |
rs10895322 | 102470256 | A | 2.854 | 4.64 × 10−7 | 2.361 | 0.007 | 2.728 | 4.54 × 10−10 |
rs3781788 | 102477556 | C | 2.616 | 1.92 × 10−7 | 1.813 | 0.048 | 2.404 | 2.42 × 10−9 |
rs7115479 | 102483150 | C | 2.617 | 1.88 × 10−7 | 1.809 | 0.049 | 2.403 | 2.44 × 10−9 |
rs7122793 | 102484945 | G | 2.559 | 3.60 × 10−7 | 1.657 | 0.103 | 2.322 | 2.79 × 10−8 |
rs7123742 | 102484946 | C | 2.629 | 1.40 × 10−7 | 1.650 | 0.106 | 2.372 | 9.75 × 10−9 |
rs7126560 | 102485553 | G | 2.636 | 1.53 × 10−7 | 1.810 | 0.049 | 2.417 | 1.93 × 10−9 |
rs17099063 | 102487065 | C | 2.610 | 2.02 × 10−7 | 1.797 | 0.052 | 2.395 | 2.82 × 10−9 |
rs2280211 | 102488131 | A | 2.604 | 2.14 × 10−7 | 1.795 | 0.052 | 2.390 | 3.09 × 10−9 |
rs11225344 | 102493269 | G | 2.625 | 2.04 × 10−7 | 1.931 | 0.024 | 2.443 | 2.95 × 10−9 |
rs2292731 | 102496405 | C | 2.425 | 2.08 × 10−7 | 1.637 | 0.075 | 2.211 | 1.93 × 10−8 |
rs12786739 | 102499728 | T | 2.417 | 2.09 × 10−7 | 1.631 | 0.077 | 2.204 | 2.15 × 10−8 |
rs12798540 | 102508004 | G | 2.866 | 4.59 × 10−8 | 1.385 | 0.358 | 2.492 | 1.31 × 10−8 |
rs12575154 | 102534875 | C | 2.792 | 1.81 × 10−7 | 1.470 | 0.296 | 2.473 | 3.14 × 10−8 |
rs34902925 | 102550821 | A | 2.796 | 1.93 × 10−7 | 1.484 | 0.285 | 2.480 | 2.92 × 10−8 |
