Fig. 3
From: The effect of artificial selection on phenotypic plasticity in maize
Comparisons of high and low FST SNPs. a Allele frequencies within the 30 temperate and 30 tropical inbred lines from Hapmap 3.1 for 736 high FST SNPs that overlap between Hapmap 3.1 and the G × E hybrid lines. Some SNPs with FST < 0.5 were designated as high FST because they lie in a window with mean FST > 0.5. b Histograms of FST distributions of 1248 high FST SNPs and 263,243 low FST SNPs from the G × E hybrid data set. FST values represent means of 20-SNP windows. c Distributions of the minor allele frequencies (MAF) in the G × E hybrid data set for 1248 high FST SNPs, 263,243 low FST SNPs, and the entire set of 372,273 polymorphic SNPs
