Table 2 E9 drug-resistant and temperature-sensitive mutants

From: The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding

Mutation

Virus

Effect

Color code

Proposed mechanism

Ref.

Phe171Ser

VACV

araCr, araAr, aphhs (when combined with mutant Cys356Tyr or Gly372Asp or Gly380Ser)

Yellow

Modification of 3′-nucleotide binding at exonuclease site

21

ΔLys174

VACV

CDVr

Yellow

Modification of 3′-nucleotide binding at exonuclease site

20

His185Tyr

VACV

ts Dts83

Black

Destabilization of the exonuclease domain

67

Ala314Thr/Val

VACV, CMLVa, MPVb

CDVr and cross-resistance to other nucleoside phosphonate drugs. Stronger drug-resistance together with mutation Ala684Val. PAAhs

Orange

Mutation in beta-hairpin; may modulate guidance from elongation to editing mode

20,22,23,24,25,26

Ser338Phe

VACV

CDVr

Orange

Indirect effect on complementary strand binding or strand switching between elongation and editing mode?

25

Cys356Tyr

VACV

PAAr, aphhs

Green

Effect on insert 2–finger interaction?

21

Gly372Asp

VACV

PAAr, aphhs

Green

Effect on insert 2–finger interaction?

21

Gly380Ser

VACV

PAAr, aphhs

Green

Effect on insert 2–finger interaction?

21

Gly392Asp

VACV

ts NG26

Black

Destabilization of insert 2

21,68

Ala498Thr/Val

VACV

aphr, PAAhs, araChs, araAhs

Red

Interference with the rotation of a base in the template required for aph binding

27

Glu611Lys

VACV

ts Cts42

Black

Destabilization of insert 3 or of the elongation site

68

Leu670Met

VACV

aphr

Red

Indirect effect on the binding of the template backbone next to aph-binding site

44

Ala684Val/Thr

VACV, CMLVa, MPVb

CDVr and cross-resistance to other nucleoside phosphonate drugs. Stronger drug-resistance together with mutation Ala314Thr

Red

Indirect effect on the binding of the template backbone in the elongation site

22,23,24,26

Ser686Asn

VACV

ts, Dts20

Black

Destabilization of insert 3 or of the elongation site

67

Thr688Ala

VACV

CDVr and cross-resistance to other nucleoside phosphonate drugs when associated with Ala314Thr mutation. PAAhs, araChs

Red

Indirect effect on template backbone binding in the elongation site

22

Thr831Ile

VACV

CDVr and cross-resistance to other nucleoside phosphonate drugs

Pink

Modulation of domain movements by a modification at the thumb–palm domain connection and a changed interaction with the complementary strand

24

Ser851Tyr

VACV

CDVr and cross-resistance to other nucleoside phosphonate drugs when combined with Ala684Val mutation

Pink

Modulation of domain movements by a modification of the thumb–palm domain interface

23

  1. r, drug-resistant; hs, drug-hypersensitivity; ts, temperature-sensitive
  2. aCamelpox virus
  3. bMonkeypox virus