Fig. 3
Integration of transcriptomics data. a Venn diagram depicting genes with significant changes according to the different transcriptomic approaches. CLIP-seq peaks without associated annotations are not shown. A subset of enriched functional annotations as determined with DAVID76 with the full lists in Supplementary Data 3 and 4. b Functional annotation of enriched genes that were associated with CsrA CLIP-seq peaks. c Functional annotation of differentially expressed genes between the WT and csrA mutant strains in any of our transcriptomic approaches or associated with CsrA CLIP-seq peaks. The bars are colored according to the false discovery rate (FDR) of the test for enrichment (EASE test, a modified Fisher’s exact test)
