Fig. 8
CsrA binds to Hfq-dependent basepairing sRNAs. a–d Electrophoretic mobility shift assays (EMSA) for the interaction of CsrA with sRNAs. a GadY. b Spot 42. c GcvB. d MicL. e mFold80 predicted GadY structure and f Spot 42 structure55 with CLIP-seq reads from all five replicates overlaid in green. Putative Hfq binding sites outlined in blue were predicted using the consensus Hfq binding motif identified in Salmonella 10. GGA motifs are circled in pink. Regions involved in Spot 42 basepairing with mRNA targets are outlined in gray55
