Table 3 Compression times and memory usage of Assembltrie and Orcom

From: Optimal compressed representation of high throughput sequence data via light assembly

Sample

Assembltrie (time)

Assembltrie (RAM)

Orcom

Orcom

without / with  strand correction

without / with strand correction

(time)

(RAM)

SRR554369

23.2

30.6

1275.9

1372.8

10.1

631.0

SRR327342

256.2

439.9

8553.6

7971.8

131.0

1767.8

MH0001.081026

118.5

145.7

7662.4

7223.5

49.6

1674.2

SRR870667

15251.1

12219.2

50580.9

53184.3

919.0

3150.6

ERR174310

31657.8

43758.2

152719.8

168861.1

6411.1

3439.2

ERP001775a

22227.0

31675.1

434425.5

473066.5

8969.1

10803.6

  1. Compression time (in seconds) and memory usage (in MBs) of Assembltrie and Orcom to generate the compression rates for the MPEG benchmark data set. The results of Assembltrie are given both with (the 3rd and 5th columns) and without (the 2nd and 4th columns) heuristic strand correction
  2. aAssembltrie was tested with non-default parameters
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