Table 4 Decompression times and memory usage of Assembltrie and Orcom

From: Optimal compressed representation of high throughput sequence data via light assembly

Sample

Assembltrie (time)

Assembltrie (RAM)

Orcom

Orcom

without / with strand correction

without / with  strand correction

(time)

(RAM)

SRR554369

2.9

3.4

249.7

259.0

4.7

15.2

SRR327342

18.0

36.1

1558.7

1678.9

30.8

30.2

MH0001.081026

13.7

15.3

1032.4

1133.7

24.9

23.7

SRR870667

190.3

207.5

10500.8

11495.9

673.6

708.6

ERR174310

524.1

775.8

31571.0

33555.2

707.3

561.7

ERP001775

758.7

860.3

86468.1

91465.8

1487.9

1532.5

  1. Decompression time (in seconds) and memory usage (in MBs) of Assembltrie and Orcom in single-threaded mode. The results of Assembltrie are given both with (the 3rd and 5th columns) and without (the 2nd and 4th columns) heuristic strand correction
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