Table 1 Runtimes of the compared methods
Chain | (Pre)alignments | Probabilistic treatment | |||||
|---|---|---|---|---|---|---|---|
MiXCR | Partis | IGoR/RepgenHMM | MiXCR | Partis | RepgenHMM | IGoR | |
TRA 100 bp | 2 × 10−4 | NA | 0.3 | NA | NA | 10−2 | 10−4 |
TRB 60 bp | 3 × 10−4 | NA | 0.1 | NA | NA | 1 | 0.1 |
IGH 130 bp | 10−3 | 10−2 | 0.2 | NA | 5 × 10−2 | >1 | 0.2 |
