Fig. 3
From: High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
Bionano Genomics maps identify mis-assemblies and hard to assemble regions in the Oxford Nanopore MinION assembly. BNG cmap_30 (blue; marked as 30) identified a a chimeric ONTcan contig 1 (green) and b the correct assembled contig 1 in the ONTmin assembly (green). The chimeric position is indicated with a red bar. c A collapsed region in ONTmin contig 5, in which approximately 15 kb sequences are missing from one of the two potential repeat regions as identified by the GC pattern (gray bars). In contrast, d shows a falsely duplicated region of approximately 18 kb, with the duplicated repeat region highlighted (red bar, 18 kb). e ONTmin assembly resolves various telomere regions, for example after 12.332 Mb on contig 1, as outlined by a GC plot (blue line). f ONTmin also resolves short centromere arrays as shown toward the end of contig 3 (blue, GC plot)
