Fig. 5
From: An imputation platform to enhance integration of rice genetic resources
Comparison of imputation results using RICE-RP versus 3KRG as a reference panel. a Imputation accuracies across minor allele frequency (MAF) bins of size 0.01 for sites that were polymorphic in both imputed data sets for IND1 subpopulation chromosome three. b Fitted logarithmic curves for imputation accuracy across the minor allele frequency spectrum in IND1. Using RICE-RP as the reference panel, it performs slightly better than 3KG at low MAF (<0.158) and slightly worse at higher MAF. c Distribution of MAF in IND1, showing that relatively few markers have MAF of greater than 0.158 (larger version found in Supplementary Fig. 5b)
