Fig. 6 | Nature Communications

Fig. 6

From: An imputation platform to enhance integration of rice genetic resources

Fig. 6

Steps for imputing rice genetic data using the Rice Imputation Server. The user uploads input files in oxford format (.gen/.sample) per chromosome. The imputation server utilizes chromosome recombination maps and the Rice Reference Panel (RICE-RP) haplotypes to impute the user’s data out to 5.2 M SNPs with IMPUTE2 and returns imputed results in plink binary format. The user can filter the imputed data using plink1.9 to produce a final data set of desired SNP density and composition

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