Table. 1 Conditionally essential genes observed to affect fitness in cattle, chicken, and pig but not mouse spleen, and their calculated TRADIS fitness score
Locus tag | Encoded reactions | Nutrient conditions |
|---|---|---|
STM1002 | 2,3-diaminopropionate ammonia lyase | (N-O2+/−, C-O2+) 2,3-diaminopropionate |
STM4484 (idnD) | l-idonate 5-dehydrogenase | (C-O2+/−) l-Idonate |
STM0042 (xylP) | d-xylose transport in via proton symport | (C-O2+/−) d-Xylose |
STM3354 | l(+)-tartrate dehydratase | (C-O2+/−) l-tartrate |
STM3255 (tagT) | d Tagatose transport via PEPPyr PTS | (C-O2+/−) d Tagatose |
STM3792 (deoP) | Deoxy D ribose transport via proton symport | (C-O2+/−) Deoxy D Ribose |
STM3793 (deoK) | Ribokinase and deoxyribokinase | (C-O2+/−) Deoxy D Ribose |
STM4467 | Arginine deiminase | (C-O2-) l-Arginine |
STM2793 (gabP) | 4-aminobutyrate transport in via proton symport | (C-O2+, N-O2+/−) 4-Aminobutanoate |
STM1627 | Formaldehyde dehydrogenase and Glycerol dehydrogenase | (C-O2+) Formaldehyde and (C-O2-) d-Glyceraldehyde |
STM0522 (allP) | Allantoin transport in via proton symport | (N-O2+/−, C-O2+/−) allantoin |
STM0974 (focA) | Formate transport via proton symport | (C-O2+) Formate AND (C-O2-) formaldehyde |
STM3671 (yiaM) | l-xylulose transport in via proton symport | (C-O2+/−) l-Xylulose |
STM2282 (glpQ) | Glycerophosphodiester phosphodiesterase | (C-O2+/−, P-O2+/−) Sn-Glycero-3-phosphocholine |
STM2037 (pduF) | (R)-Propane-1,2-diol facilitated transport | (C-O2+) (R)-Propane-1,2-diol |
STM1620 | Glycolate oxidase | (C-O2+) Glycolate |
STM0154 (lpdA) | Pyruvate dehydrogenase and 2-Oxogluterate dehydrogenase | (C-O2-) DCMP and Deoxyuridine and DUMP and Deoxycytidine |
