Table 1 Structural and NMR statistics for the DC-34/MYC G4 complex

From: Chemical and structural studies provide a mechanistic basis for recognition of the MYC G-quadruplex

 

DC-34/MYC G4

NMR distance and dihedral constraints

Distance constraints

 Intramolecular NOEs

907

 Intra-residue

610

 Inter-residue

297

  Sequential (|i – j| = 1)

253

  Medium range (|i – j| ≤ 4)

22

  Long range (|i – j| ≥ 5)

22

 Hydrogen bonds

27

 Intermolecular NOEs

45

Dihedral angle restraints

 χ (O4′-C1′-N9-C4)

12

G-tetrad planarity (5 atoms sub-groups)

24

Coordination bond (O6-K+)

16

Structure statistics

Violations (mean and s.d.)

 

 Distance constraints (Å)

0

 Dihedral angle constraints (°)

0

 Max. dihedral angle violation (°)

0

 Max. distance constraint violation (Å)

0

Deviations from idealized geometry

 Bond lengths (Å)

0.005 ± 0.000

 Bond angles (°)

0.705 ± 0.005

 Impropers (°)

0.461 ± 0.031

Average pairwise r.m.s.d (Ã…)a

 All atoms

0.89 ± 0.26

 G-tetrads

0.55 ± 0.12

 5′-end (T4-G5-A6)

0.29 ± 0.10

 3′-end (T23-A24-A25)

0.29 ± 0.08

  1. aPairwise r.m.s.d. was calculated among 15 refined structures